Nint024007.1
Basic Information
- Insect
- Neoascia interrupta
- Gene Symbol
- retn_1
- Assembly
- GCA_947623515.1
- Location
- OX392462.1:48996096-49070266[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.24 1.5e+03 0.6 0.0 41 65 95 120 88 131 0.70 2 2 5.2e-21 3.1e-17 63.7 0.0 2 79 262 337 261 338 0.93
Sequence Information
- Coding Sequence
- ATGGATTGTATTCGATCAAATAATGCGGAAAGAGATTCGGACTTAGGAGATGATTCACCTGTGTCTAACGACGAACACTCCGAGGACGAGATGAGAGACTGCGAGTCAATGGACGGCGAGAATACCAGCCGACTAAACGCCTCGATGGCCAGCGGAATGGGCATCGACTACGGGGGACTGGGAGGCGGCAGGAGCCCCGACCAACACAACACAGAAATTCCTATGAGCCACCATCACGCACAGTTCGCCCCGAATCATCCGCTGGGGGCGCTGGGAAATTTCATGAACATGGGCGGCCTGCACAGTATACCCAATCTGCAGCAACAGCACAACGATGTTCTGGAGAAACTAAAAATGCAGGTCCGCGACATGAAAGTCGGATTGATGGATCAAGAGTACCCACCACATGCAAATTTCGGCCCAAACGTCATTCCAACCCCCATCAATACGGCGTTCACGATCCCACCAACGTCGCATCCATCGTTCAGTCACTCCCCGCAGAATCTATCGCAGCCGTCGCCGCAGCCGCAGCAAACCATGATGTCTACGCACCAACAACAGCAGCAGCAACAGTCGCAATCACAACAAACGAGTTCCCAATCGATATCGAATGGTTTCTCGTTCACGTCGCCCTCAGCCCCAAGCACAAAAGACGTGAATCCCGCATCAAATTCATCAACATCAAGCGAAGCGTCTAACTCGTCACAACAGAACAATGGCTGGAGCTTCGAGGAACAGTACAAACAAGTTCGTCAGCTCTATGAGATCAACGATGACCCTAAGCGAAAGGAGTTTCTCGATGACTTGTTTTCCTTCATGCAAAAACGAGGTACGCCCATAAATCGCTTACCGATCATGGCGAAATCCGTGCTCGATCTGTACGAGCTGTACAACTTGGTCATAGCGAGAGGTGGTCTCGTCGATGTGATCAACAAAAAGCTATGGCAGGAGATCATCAAAGGGCTGCATCTGCCATCGAGCATAACCAGTGCAGCGTTTACCCTGCGCACGCAGTAA
- Protein Sequence
- MDCIRSNNAERDSDLGDDSPVSNDEHSEDEMRDCESMDGENTSRLNASMASGMGIDYGGLGGGRSPDQHNTEIPMSHHHAQFAPNHPLGALGNFMNMGGLHSIPNLQQQHNDVLEKLKMQVRDMKVGLMDQEYPPHANFGPNVIPTPINTAFTIPPTSHPSFSHSPQNLSQPSPQPQQTMMSTHQQQQQQQSQSQQTSSQSISNGFSFTSPSAPSTKDVNPASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00694378;
- 90% Identity
- iTF_00315723;
- 80% Identity
- -