Cvar012917.1
Basic Information
- Insect
- Cheilosia variabilis
- Gene Symbol
- -
- Assembly
- GCA_951230905.1
- Location
- OX579676.1:121684725-121689996[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.3 1.9e+02 3.6 1.7 1 23 245 269 245 269 0.91 2 13 0.072 10 7.6 3.9 1 21 275 295 275 298 0.80 3 13 6.4 9e+02 1.5 0.5 1 9 303 311 303 313 0.87 4 13 0.27 38 5.8 2.7 1 13 332 344 332 356 0.78 5 13 9.8e-05 0.014 16.6 3.8 1 23 362 384 362 384 0.98 6 13 0.0046 0.65 11.4 1.1 1 23 390 412 390 412 0.95 7 13 0.00012 0.017 16.4 0.9 1 23 418 440 418 440 0.99 8 13 2.8e-06 0.00039 21.5 1.5 1 23 446 469 446 469 0.92 9 13 8.8e-05 0.012 16.8 2.7 1 23 484 506 484 506 0.98 10 13 4.9e-06 0.0007 20.7 1.8 1 23 511 534 511 534 0.96 11 13 0.00015 0.021 16.1 2.0 1 23 540 562 540 562 0.97 12 13 3.7e-06 0.00052 21.1 0.3 1 23 567 589 567 589 0.99 13 13 1.4e-05 0.002 19.3 1.9 1 23 595 617 595 617 0.98
Sequence Information
- Coding Sequence
- ATGTGCAGTGTGTTTAAATTGGATCTAAACAAATTCAACATAGAAGATGCCTGCAGAATGTGCGGTAAATGCGACGTAATAACGTCCTCGGGTCTTGTAAACATTTTCTCTGCCGACTCGCAGTCCGACGAGAAGAATAAAGTACTTCGAGAATTTGATTTATGGAAATTGAGTATCTCCGAAGATGATGGTCTTCCACAAAAAGTGTGTAAACAATGTTTTGGCAAATTTTCCCTTATCCATAATTTTCGCAAACAGTGCGAAAACATTCAAGTCGCATTCAAAACTCTATTCTACAAACAACGAAAGTTGCTCCCACACACAACAAATAAAGTATCTGTGCCAATTCAGTCGGTGGAGTTGCAGCCAAAAGTCGAGGTACACGATTCTGCGGCAGAGAACGAAGACTACCATGACAACGGGGGGTTAGATGAGATTCCATTTGAAGATGCTGAGTGTAAAAGTGTTCAGTACTTCGAATTGGAAACGCCCAAAGACAGTGAACCTAGTAAACAAGATTCCCTTGTCGAAAAGAAACATAATGACGAAGAGGAAGAGCCAACGATTGCCGAATTAAATGAACTTAACGACGAGGAGTGGAACACACTATCGCCAAAAGAATTGATTCCCAAGTTAGAGTATGACGACGATGAGTCCAGCCTGAGCTCCGATTTGCTAAGCTCAGATGACGAACGCAAGCTAAATCGTAGGACAAAAACGAAGCCCAACGAATTCAAGTGCGAGTACTGCAAGAACTTTTGTCTGGAAAATCAGGAAGATCTCGATACGCATGTAAAGGAAATACACTCGACCGATACTCCTTATACATGTTCGCTGTGCACTAAGACGTTCAGCAatgccaagcaacgaaactgCCACTTTATGGTCAGTCACAAGTGGAAGTCACATGAGTGTGATGTTTGTCACAAAATGATAAAGGGCGGCAAGCCAGGTCTGAAGAATCATAAGGACAATGTGCACAATAAGTCCAACTATGAGTGTGATATTTGTCAGAAGAAATTCGAGAACATCTCGCTAAGTCGGTTTAGGTATCATCTGCGATGGCACGACAGTTCAAAGTTGTTCTCCTGTAAGTCTTGTGAGAAAACGTTTGTCACGCGATACCACATGGAGGAACACGAGCGGACGCACACCGACGAGAAATCATTCCTCTGCAGCATTTGTGGTCTAGGCTTGCGTTGCAAACAGAACTTGATCTGGCATATGAAGACGCACACCGGAGAAAGGACATATCAATGCTCTCAATGCAGCAAAGCCTTCCCAACACCAACAGCCCTAGCGTGCCATATAAAGACGCATAGCAGCGAGAAAAAGCACGAATGCGACATCTGCAATAAGCGTTTCAAGACGAAAGGCAGCCTCAAAACGCACATTGGCAATGTACACAAGGTAGACTTCAACGAAGGGACGCCAAACTCCTCGCCACGTTATTGTTGTCAGCTATGTCCCAGAACATTCATTTTTGAACGTGATCTCATAAAGCATTTAAAAACCCACGAACATCGGCGCCATGTTTGTGATGTTTGCGGTCTGTCCTATATGCAATCTTCCCACTTAAAGAAGCACATGGAGTCCATCCATCTGAACTACAAGCCGCATGTTTGCACTATATGCGGTCATGCTTTCCCATTCGAGTTTAACCTGAAACAACACGAGTTGACCCATAAAGaAAAGGAATTCAAATGCGATGTGTGCGATAAGGCGTTTACTTTGCTGCCATCGCTGGTATCGCATCAGAGGACCCACACTGGCGAAAAGCCCTTCCAGTGTCATCTCTGTGAAAGATCGTATGCCAACAGAGGAAATCTTAAAAGTCATGTTGAGAAGCATTTGCTAGAAGCGAAGCAGAACCAGACATTCACGCAAATCGTCTTGCCCGTGATTTCTGGCGCAATCGATATTCCACAATCGTCAACGTTCACTCTGTTTGATATTAaaatcaagctaagaatcacacttgccagTCGCTGTTACTTCGTCCTAAGAAtcctgctctatGGTGCTGAAGCACTGACGGATGAAGATGTCCTTGGtcgcttcgaacgcaaaattcttcgagggATTTTCGGTCCCATTTGCGTTGACGGCCTTTGGAGGAGGATATTTAACAGCGAATggaacctcaaccaacttggagtgcgcaactggaggcagtaa
- Protein Sequence
- MCSVFKLDLNKFNIEDACRMCGKCDVITSSGLVNIFSADSQSDEKNKVLREFDLWKLSISEDDGLPQKVCKQCFGKFSLIHNFRKQCENIQVAFKTLFYKQRKLLPHTTNKVSVPIQSVELQPKVEVHDSAAENEDYHDNGGLDEIPFEDAECKSVQYFELETPKDSEPSKQDSLVEKKHNDEEEEPTIAELNELNDEEWNTLSPKELIPKLEYDDDESSLSSDLLSSDDERKLNRRTKTKPNEFKCEYCKNFCLENQEDLDTHVKEIHSTDTPYTCSLCTKTFSNAKQRNCHFMVSHKWKSHECDVCHKMIKGGKPGLKNHKDNVHNKSNYECDICQKKFENISLSRFRYHLRWHDSSKLFSCKSCEKTFVTRYHMEEHERTHTDEKSFLCSICGLGLRCKQNLIWHMKTHTGERTYQCSQCSKAFPTPTALACHIKTHSSEKKHECDICNKRFKTKGSLKTHIGNVHKVDFNEGTPNSSPRYCCQLCPRTFIFERDLIKHLKTHEHRRHVCDVCGLSYMQSSHLKKHMESIHLNYKPHVCTICGHAFPFEFNLKQHELTHKEKEFKCDVCDKAFTLLPSLVSHQRTHTGEKPFQCHLCERSYANRGNLKSHVEKHLLEAKQNQTFTQIVLPVISGAIDIPQSSTFTLFDIKIKLRITLASRCYFVLRILLYGAEALTDEDVLGRFERKILRGIFGPICVDGLWRRIFNSEWNLNQLGVRNWRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00316258; iTF_00314643; iTF_00311317; iTF_00313766; iTF_00312938; iTF_01223690; iTF_00312089;
- 90% Identity
- iTF_00316258; iTF_00314643; iTF_00311317; iTF_00313766; iTF_00312938; iTF_00312089;
- 80% Identity
- -