Basic Information

Insect: Cheilosia scutellata
Gene Symbol: -
Assembly: GCA_955612985.1
Location: OY015312.1:109996879-109999318[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.4 1.7e+02 3.7 1.7 1 23 225 249 225 249 0.91

2 13 0.083 9.8 7.6 4.0 1 21 255 275 255 278 0.80

3 13 6.9 8.1e+02 1.6 0.5 1 9 283 291 283 293 0.87

4 13 0.3 36 5.9 2.7 1 13 312 324 312 336 0.78

5 13 0.00018 0.021 16.0 3.9 1 23 342 364 342 364 0.98

6 13 0.005 0.58 11.5 1.1 1 23 370 392 370 392 0.95

7 13 0.00012 0.014 16.6 1.0 1 23 398 420 398 420 0.99

8 13 3.1e-05 0.0036 18.4 2.7 1 23 426 449 426 449 0.90

9 13 9.5e-05 0.011 16.9 2.7 1 23 464 486 464 486 0.98

10 13 5.3e-06 0.00063 20.8 1.8 1 23 491 514 491 514 0.96

11 13 0.00016 0.019 16.2 2.0 1 23 520 542 520 542 0.97

12 13 2.3e-06 0.00027 22.0 0.3 1 23 547 569 547 569 0.99

13 13 1.5e-05 0.0018 19.4 1.9 1 23 575 597 575 597 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.4	1.7e+02	3.7	1.7	1	23	225	249	225	249	0.91
2	13	0.083	9.8	7.6	4.0	1	21	255	275	255	278	0.80
3	13	6.9	8.1e+02	1.6	0.5	1	9	283	291	283	293	0.87
4	13	0.3	36	5.9	2.7	1	13	312	324	312	336	0.78
5	13	0.00018	0.021	16.0	3.9	1	23	342	364	342	364	0.98
6	13	0.005	0.58	11.5	1.1	1	23	370	392	370	392	0.95
7	13	0.00012	0.014	16.6	1.0	1	23	398	420	398	420	0.99
8	13	3.1e-05	0.0036	18.4	2.7	1	23	426	449	426	449	0.90
9	13	9.5e-05	0.011	16.9	2.7	1	23	464	486	464	486	0.98
10	13	5.3e-06	0.00063	20.8	1.8	1	23	491	514	491	514	0.96
11	13	0.00016	0.019	16.2	2.0	1	23	520	542	520	542	0.97
12	13	2.3e-06	0.00027	22.0	0.3	1	23	547	569	547	569	0.99
13	13	1.5e-05	0.0018	19.4	1.9	1	23	575	597	575	597	0.98

Sequence Information

Coding Sequence: ATGTGCGGTAAATGCGACGTAATAACGTCCTCAGGTCTTGTAAACATTTTCTCCGCCGACTCACAGTCTGAGGAgaagaataaagttattcgagaaTTTGATTTATGGAAATTAAGTATCTCTGAAGATGATGGTCTTCCGCAAAAAGTGTGTAAACAATGCTTTGGCAAATTTTCCCTTATTCATAATTTTCGCAAACAGTGTGAAAACATCCAAGTTGCATTCAAAACTCTTTTCTACAAACAACGAAAGTTACTCTTAAACCCAACTGATAAAGTGACTGGACCTCTTCAATCCGTGAATTTGCAGCCAAAAGTCGAAGAACACGATTCTGGGGCAGAAAACGAGCACCATGATATCGATGCCTTAGATGAGATTCCATTTGAAGATGCAGAATGTAAAAGTGTTCAGTACTTCGAATTGGACGCAGCCAAAGGTGACGAGCCTATCAAAGAAATTTCCATTGTTGAGGTGAAAGATGTTGAGGAAGAGAAGGAGCCAACAATTGCCGAACTAAATGAACTCAACGACGAGGAATGGAACTCCATATCACCAAAAGAATTTATTCCCAAGTTAGAATATGACGACGATGAGTCGAGTTTGAGCTCTGATTTACTAAGCTCAGACGACGAGCGCATGCTAAATCGTAAGGTCAAATCCAAACCCAACGAATTCAAATGCGAATACTGCAAGAACTTTTGTCTGGAAAATCAGGAAGATCTGGATACGCATGTGAAGGAAATACACTCAACCGATACCCCGTATACATGTTCCCTTTGCACAAAGACCTTCACCAATGCCAAGCAAAGGAACTGCCACTTTATGGTGAGTCACAAGTGGAAGTCACATGAGTGTGATGTTTGCCACAAAATGATAAAGGGTGGCAAGCCAGGTCTGAAGAATCATAAGGATAACGTGCACAATAAGTCGAACTATGAGTGTGATATTTGTCAGAAGAAATTCGAGAACATCTCGTTAAGTCGGTTTAGGTATCATCTGCGATGGCACGACAGTTCAAAGTTGTTCTCCTGCAAATCCTGTGACAAAACCTTTGTCACACGATATCACATGGATGAACATGAGCGGACGCACACCGACGAGAAATCATTCCTTTGTAGCATTTGTGGTCTAGGCTTACGTTGCAAACAGAACTTGATCTGGCACATGAAGACGCATACGGGAGAAAGGACATATCAATGTACTCAGTGTAGCAAAGCCTTCCCAACACCAACCGCCCTAGCATGCCATATAAAGACGCATAGCAGCGAGAAAAAGCACGAATGCGACATCTGCAACAAGCATTTCAAGACGAAAGGCAGCCTCAAAACGCACGTCGGCAATGTGCACAAGGTGGACTTCAACGAAGGGACGCCAAACTCCTCACCACGCTATTGTTGTCAGCTATGTCCCAGAACATTTATTTTCGAACGTGATCTCATTAAGCATTTAAAAACCCACGAACATCGGCGACATGTTTGTGATGTCTGCGGCCTGTCCTATATGCAATCTTCCCACTTAAAAAAACACATGGAATCCATCCATCTGAATTACAAGCCGCATGTGTGCACTATTTGCGGTCATGCTTTCCCATTCGAGTTTAATCTGAAACAACACGAGTTGACCCATAAAGaaaaggaaTTCAAATGCGATGTATGCGATAAGGCGTTTACTTTGCTGCCATCGCTGATATCGCATCAGAGGACACATACTGGCGAAAAGCCCTTCCAATGCCATctttgtgaaagatcttatgCCAACAGAGGGAATCTGAAAaGTCATGTTGAGAAGCATTTGCTAGAAGCGAAGCAGAATCAGACTTTTACGCAAATCATTTTGCCGGTGATTTCGGGATCTATCGATATTCCTCAATCATCAACGTTCACTCTGTTTGATATCAGCAATACTAACCCGGATCAACAACAGCAGCTGGTTCACCAACAGATCGAACACCAACAGCTCGAACACCAACAGATCGATCACCAGCAGATGCAcctgcagcagcagcaacagcagcttCACCACCACCAGCAAGAACAAGAGCAGGTGGTGTTTAATTCACTATAA
Protein Sequence: MCGKCDVITSSGLVNIFSADSQSEEKNKVIREFDLWKLSISEDDGLPQKVCKQCFGKFSLIHNFRKQCENIQVAFKTLFYKQRKLLLNPTDKVTGPLQSVNLQPKVEEHDSGAENEHHDIDALDEIPFEDAECKSVQYFELDAAKGDEPIKEISIVEVKDVEEEKEPTIAELNELNDEEWNSISPKEFIPKLEYDDDESSLSSDLLSSDDERMLNRKVKSKPNEFKCEYCKNFCLENQEDLDTHVKEIHSTDTPYTCSLCTKTFTNAKQRNCHFMVSHKWKSHECDVCHKMIKGGKPGLKNHKDNVHNKSNYECDICQKKFENISLSRFRYHLRWHDSSKLFSCKSCDKTFVTRYHMDEHERTHTDEKSFLCSICGLGLRCKQNLIWHMKTHTGERTYQCTQCSKAFPTPTALACHIKTHSSEKKHECDICNKHFKTKGSLKTHVGNVHKVDFNEGTPNSSPRYCCQLCPRTFIFERDLIKHLKTHEHRRHVCDVCGLSYMQSSHLKKHMESIHLNYKPHVCTICGHAFPFEFNLKQHELTHKEKEFKCDVCDKAFTLLPSLISHQRTHTGEKPFQCHLCERSYANRGNLKSHVEKHLLEAKQNQTFTQIILPVISGSIDIPQSSTFTLFDISNTNPDQQQQLVHQQIEHQQLEHQQIDHQQMHLQQQQQQLHHHQQEQEQVVFNSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00315436;
90% Identity: iTF_00315436;
80% Identity: -