Curb005596.1
Basic Information
- Insect
- Cheilosia urbana
- Gene Symbol
- -
- Assembly
- GCA_946477595.1
- Location
- CAMLCJ010000042.1:7549972-7551465[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 2.7 3e+04 -3.5 0.2 26 44 160 179 157 182 0.59 2 8 0.66 7.3e+03 -1.6 0.1 22 43 215 236 209 240 0.79 3 8 0.0024 26 6.3 0.1 21 50 242 270 236 273 0.85 4 8 0.00053 5.9 8.4 0.5 21 48 297 324 286 328 0.85 5 8 0.00033 3.6 9.0 0.1 21 45 325 349 321 356 0.89 6 8 0.0028 31 6.0 0.1 18 47 377 407 368 414 0.82 7 8 0.0021 23 6.5 0.0 23 45 439 461 435 464 0.89 8 8 0.0072 80 4.7 0.0 21 45 465 489 462 494 0.89
Sequence Information
- Coding Sequence
- atgGCTGGTGAGATGACACAAATCGAGTTTTCCGATATGGTCAAGGAAGGCAACTGTAGCTTTTCCGACTGGCCTGAAGAGGATGAAGAACAAGATGATCATATCAACGGGATTCTCCTTACCGAGGATATGATCAAACAAGAACCTGAATTCATAGTAGACTCCAACGACATCAAAGAGGAACAGAAGATACGTACATTTCTCAAGAAGGTCAACATCGACGATGAGGAGAGGCAAAAGCTTAACTGGCTCATTTGTATACTGTGTGATGAACGCTTTTTATCAACCAAAGAACTGTCCCTACATGTGCAGGAACACGCCAAAGCCGCCCTAAAAGAGGAAGGAGACAAAATCCAGCCTCCAAAGGAGCTCACCAATCGACAGGCACCAAAAACGCAATATACTGGCTTTACCAGGCAGGAACTCTTCCAGGATTACATAAACATCAGCGTCGAGTTGGATGGCAAACCGACATATACCTGTAAACTGTGCCCCAACAAAGTCTTCGCACGGCAAGTGTCTATGCGAAATCACATGCGCATTCACGAGAATCCAACTTATAAGGAACGCTCGTGCCATATCTGCAAAAAGACATTCCTGCGAAGGGACACATTGCTAGTTCACTTGCGCATTCATAGCAACGAGCGGAATTACAAGTGCGACGTCTGCGAAGCCTCCTTCTCACATTCCAGTTCGCTGGTGTCGCACAAGCGTATCCACACCGGCGAAAAACCATATGTATGTTCCATTTGTTCAAAGTCCTTTCGCGAGTCTGGTCAATTGACCGCACACAAGAAGACCCACTTCGAAAAGCTCTTGCAATGCCCTAAGTGCGAGAAGAAATTCACATCCAACAAGACGCTTCGTGTACACTGCCGAACCCATACCGATGAGCGTCCCTACACCTGCACCTACTGCGAAAAGATGTTCCGCTGCAGTACCAGCCTGACAACGCACCTGCGTGTGCATACTGGAGAAAAGCCCTACAAATGCGAAATATGTTCATATGCCACCAAACAGTCGGGATATCTTCGCACTCATATGCGAACGCACACCGGCGAGAGACCGTACAAATGTTTGTACTGCGAAAAAGCCTTCTCGGAGAAAAAGCGCCTGATTACCCACACTCGCAGCCACACGGGCGAACGGCCGTACAAGTGTATTTACTGCGATGCGGCATTCGCGCGAAACGATAACCTCAAGTACCATCTGCGAACGCACACCGGTGAAAAACCGTTCGAGTGCGCTGAATGTGGCAAGCGATTCACTCAGGGTAACGCCCTCAGTATGCACCAAAAGATTCACACCGGTGTCAAACCATACTCTTGCCCGCACTGCGACATGAAATTCAGACAAAGCGGCACTTTGGTCACTCACTTGCTAATGCACACGAACGAACGGCCGTTCAAGTGTGATCTATGCGAGTCTGGATTCCGGCAGAAGGCTTTGCTGAAGAAGCATGTCGCCAGTGTTCATGGCAGTATAATGACCTAG
- Protein Sequence
- MAGEMTQIEFSDMVKEGNCSFSDWPEEDEEQDDHINGILLTEDMIKQEPEFIVDSNDIKEEQKIRTFLKKVNIDDEERQKLNWLICILCDERFLSTKELSLHVQEHAKAALKEEGDKIQPPKELTNRQAPKTQYTGFTRQELFQDYINISVELDGKPTYTCKLCPNKVFARQVSMRNHMRIHENPTYKERSCHICKKTFLRRDTLLVHLRIHSNERNYKCDVCEASFSHSSSLVSHKRIHTGEKPYVCSICSKSFRESGQLTAHKKTHFEKLLQCPKCEKKFTSNKTLRVHCRTHTDERPYTCTYCEKMFRCSTSLTTHLRVHTGEKPYKCEICSYATKQSGYLRTHMRTHTGERPYKCLYCEKAFSEKKRLITHTRSHTGERPYKCIYCDAAFARNDNLKYHLRTHTGEKPFECAECGKRFTQGNALSMHQKIHTGVKPYSCPHCDMKFRQSGTLVTHLLMHTNERPFKCDLCESGFRQKALLKKHVASVHGSIMT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01395957;
- 90% Identity
- iTF_00311461;
- 80% Identity
- iTF_00314554;