Basic Information

Insect: Cheilosia urbana
Gene Symbol: -
Assembly: GCA_946477595.1
Location: CAMLCJ010000042.1:7549972-7551465[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 8.1 1.4e+03 1.4 0.2 5 23 88 106 85 106 0.90

2 13 4.1e-05 0.0069 18.0 0.6 1 23 159 182 159 182 0.98

3 13 0.00019 0.032 15.9 2.6 2 23 191 212 191 212 0.97

4 13 3.3e-06 0.00056 21.5 1.4 1 23 218 240 218 240 0.99

5 13 6.9e-07 0.00012 23.6 0.9 1 23 246 268 246 268 0.99

6 13 0.0001 0.017 16.8 4.7 2 23 274 295 273 295 0.96

7 13 0.0002 0.034 15.9 4.8 1 23 301 323 301 323 0.99

8 13 1.3e-06 0.00021 22.8 1.4 1 23 329 351 329 351 0.99

9 13 4.1e-05 0.0068 18.0 2.2 1 23 357 379 357 379 0.99

10 13 6e-06 0.001 20.6 0.6 1 23 385 407 385 407 0.98

11 13 1.5e-05 0.0025 19.4 0.2 1 23 413 435 413 435 0.98

12 13 2.6e-06 0.00044 21.8 1.3 1 23 441 463 441 463 0.98

13 13 0.00019 0.031 15.9 0.3 1 23 469 492 469 492 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	8.1	1.4e+03	1.4	0.2	5	23	88	106	85	106	0.90
2	13	4.1e-05	0.0069	18.0	0.6	1	23	159	182	159	182	0.98
3	13	0.00019	0.032	15.9	2.6	2	23	191	212	191	212	0.97
4	13	3.3e-06	0.00056	21.5	1.4	1	23	218	240	218	240	0.99
5	13	6.9e-07	0.00012	23.6	0.9	1	23	246	268	246	268	0.99
6	13	0.0001	0.017	16.8	4.7	2	23	274	295	273	295	0.96
7	13	0.0002	0.034	15.9	4.8	1	23	301	323	301	323	0.99
8	13	1.3e-06	0.00021	22.8	1.4	1	23	329	351	329	351	0.99
9	13	4.1e-05	0.0068	18.0	2.2	1	23	357	379	357	379	0.99
10	13	6e-06	0.001	20.6	0.6	1	23	385	407	385	407	0.98
11	13	1.5e-05	0.0025	19.4	0.2	1	23	413	435	413	435	0.98
12	13	2.6e-06	0.00044	21.8	1.3	1	23	441	463	441	463	0.98
13	13	0.00019	0.031	15.9	0.3	1	23	469	492	469	492	0.96

Sequence Information

Coding Sequence: atgGCTGGTGAGATGACACAAATCGAGTTTTCCGATATGGTCAAGGAAGGCAACTGTAGCTTTTCCGACTGGCCTGAAGAGGATGAAGAACAAGATGATCATATCAACGGGATTCTCCTTACCGAGGATATGATCAAACAAGAACCTGAATTCATAGTAGACTCCAACGACATCAAAGAGGAACAGAAGATACGTACATTTCTCAAGAAGGTCAACATCGACGATGAGGAGAGGCAAAAGCTTAACTGGCTCATTTGTATACTGTGTGATGAACGCTTTTTATCAACCAAAGAACTGTCCCTACATGTGCAGGAACACGCCAAAGCCGCCCTAAAAGAGGAAGGAGACAAAATCCAGCCTCCAAAGGAGCTCACCAATCGACAGGCACCAAAAACGCAATATACTGGCTTTACCAGGCAGGAACTCTTCCAGGATTACATAAACATCAGCGTCGAGTTGGATGGCAAACCGACATATACCTGTAAACTGTGCCCCAACAAAGTCTTCGCACGGCAAGTGTCTATGCGAAATCACATGCGCATTCACGAGAATCCAACTTATAAGGAACGCTCGTGCCATATCTGCAAAAAGACATTCCTGCGAAGGGACACATTGCTAGTTCACTTGCGCATTCATAGCAACGAGCGGAATTACAAGTGCGACGTCTGCGAAGCCTCCTTCTCACATTCCAGTTCGCTGGTGTCGCACAAGCGTATCCACACCGGCGAAAAACCATATGTATGTTCCATTTGTTCAAAGTCCTTTCGCGAGTCTGGTCAATTGACCGCACACAAGAAGACCCACTTCGAAAAGCTCTTGCAATGCCCTAAGTGCGAGAAGAAATTCACATCCAACAAGACGCTTCGTGTACACTGCCGAACCCATACCGATGAGCGTCCCTACACCTGCACCTACTGCGAAAAGATGTTCCGCTGCAGTACCAGCCTGACAACGCACCTGCGTGTGCATACTGGAGAAAAGCCCTACAAATGCGAAATATGTTCATATGCCACCAAACAGTCGGGATATCTTCGCACTCATATGCGAACGCACACCGGCGAGAGACCGTACAAATGTTTGTACTGCGAAAAAGCCTTCTCGGAGAAAAAGCGCCTGATTACCCACACTCGCAGCCACACGGGCGAACGGCCGTACAAGTGTATTTACTGCGATGCGGCATTCGCGCGAAACGATAACCTCAAGTACCATCTGCGAACGCACACCGGTGAAAAACCGTTCGAGTGCGCTGAATGTGGCAAGCGATTCACTCAGGGTAACGCCCTCAGTATGCACCAAAAGATTCACACCGGTGTCAAACCATACTCTTGCCCGCACTGCGACATGAAATTCAGACAAAGCGGCACTTTGGTCACTCACTTGCTAATGCACACGAACGAACGGCCGTTCAAGTGTGATCTATGCGAGTCTGGATTCCGGCAGAAGGCTTTGCTGAAGAAGCATGTCGCCAGTGTTCATGGCAGTATAATGACCTAG
Protein Sequence: MAGEMTQIEFSDMVKEGNCSFSDWPEEDEEQDDHINGILLTEDMIKQEPEFIVDSNDIKEEQKIRTFLKKVNIDDEERQKLNWLICILCDERFLSTKELSLHVQEHAKAALKEEGDKIQPPKELTNRQAPKTQYTGFTRQELFQDYINISVELDGKPTYTCKLCPNKVFARQVSMRNHMRIHENPTYKERSCHICKKTFLRRDTLLVHLRIHSNERNYKCDVCEASFSHSSSLVSHKRIHTGEKPYVCSICSKSFRESGQLTAHKKTHFEKLLQCPKCEKKFTSNKTLRVHCRTHTDERPYTCTYCEKMFRCSTSLTTHLRVHTGEKPYKCEICSYATKQSGYLRTHMRTHTGERPYKCLYCEKAFSEKKRLITHTRSHTGERPYKCIYCDAAFARNDNLKYHLRTHTGEKPFECAECGKRFTQGNALSMHQKIHTGVKPYSCPHCDMKFRQSGTLVTHLLMHTNERPFKCDLCESGFRQKALLKKHVASVHGSIMT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01395957;
90% Identity: iTF_00311461;
80% Identity: iTF_00314807;