Cgro009616.1
Basic Information
- Insect
- Cheilosia grossa
- Gene Symbol
- -
- Assembly
- GCA_963082955.1
- Location
- OY720145.1:46251260-46257499[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.8e-12 2e-09 37.4 0.0 4 42 178 217 175 219 0.87 2 3 1.9 1e+03 -0.1 0.0 28 37 249 258 248 264 0.85 3 3 1.1e-09 5.9e-07 29.5 0.0 4 39 288 323 286 329 0.85
Sequence Information
- Coding Sequence
- ATGCACAACCACAATCTCATCCAGACCACAAACACAGTGACAATTGCATATGAGTTGGAATGCTGCAGGAAAATATCGTTAGTGGCGGTGTCAGAACCGGCAAACTGTCAGAAACTTACAATCCCAAGCGGCAGTAGTGTTAAATTGCACTGGAACGGTGAGGTCATCTATTGGATTGGAAACTCGGACGAAATAAAGAGTGTCGACCATTCCGACACAGATTCAAACCCGACACTGATGCCGATTTGCCCGAGAGATGTCTCAGCACCAACAAATGATCAGTTTGTTATATTCGAGCTGAAAACCGACACAGAACCAATGTACAATTATGTGATAACGCAAGTCAAGAAACCACCGCCCGACGACGGGGATCGCCGTCCGAAGACCTCCGCCCATTCGGTTGAAGGTCAAACCGATGGTGTACACTTGAATAATCCTCAGTATGTTATAAGTGTCCAGATACCAGTCGAAGCCGACAAAGAAGAGGCAAAGGAGAACTCACCCAAGAGCCGACGTGCTACTAACCGGAAAAAGCTAGCCGAAGCACTAGACGCGGTAGTTAATAAGCAGTTCACTATAAGCAAAGCAGCTAGTGTGTTTCACGTGACAAAGAGCACCCTCTGGAAGGAGGTGAATAAACACACCAATCATCGGCGGAAAAAGGTTGATCAAGAGCTAAATCAAAAGATCGCTGATCGTATTTGTGCTGGTGAATCTCTCTCAGGCATTTCGAGATCCCTTAAAGTGGCTAAGTCCACACTGCATCAGCACAAGGTTCGACTTGCACAGAGTGGCCAGCTGCCACCAAATGTGACGCTCAAACCGTCCACAGATCCTTCAGAAAGACTTGCTATGAAAGAACGTATCTTGCAAGCTTTTCGCGGTTGCCGTGTAAACGGCATGTCGATACGTTTTGCCGCAAAGTTCTACTCAATTCCACCGTCAACGCTATGGAAGCATATACGACGTTTCAAAGCCTCACAGCAACATAAGGCAGGTGAAAGTACGAGTACTGCTCACACGGGTGCGGATAAGAACGCCGATGAAATCGGAGACTTGTCAGAAGACCAATCGGTTGGACAAGAAGATGCTGACCTTGATGACTTCGATGTGGACGCCTACTGTGACCAACAAGAGAAGACCAGTGAAGATGGTGACTTTTTGATCAGTTTTGACTTTGAAACTTTTGAACAGTATGTGAAGAGAGAGCTCGACTGA
- Protein Sequence
- MHNHNLIQTTNTVTIAYELECCRKISLVAVSEPANCQKLTIPSGSSVKLHWNGEVIYWIGNSDEIKSVDHSDTDSNPTLMPICPRDVSAPTNDQFVIFELKTDTEPMYNYVITQVKKPPPDDGDRRPKTSAHSVEGQTDGVHLNNPQYVISVQIPVEADKEEAKENSPKSRRATNRKKLAEALDAVVNKQFTISKAASVFHVTKSTLWKEVNKHTNHRRKKVDQELNQKIADRICAGESLSGISRSLKVAKSTLHQHKVRLAQSGQLPPNVTLKPSTDPSERLAMKERILQAFRGCRVNGMSIRFAAKFYSIPPSTLWKHIRRFKASQQHKAGESTSTAHTGADKNADEIGDLSEDQSVGQEDADLDDFDVDAYCDQQEKTSEDGDFLISFDFETFEQYVKRELD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00314186; iTF_00315860;
- 90% Identity
- iTF_00315860;
- 80% Identity
- -