Curb019240.1
Basic Information
- Insect
- Cheilosia urbana
- Gene Symbol
- -
- Assembly
- GCA_946477595.1
- Location
- CAMLCJ010000161.1:213824-214801[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.9e-13 5.8e-10 40.0 0.0 4 42 99 138 96 140 0.87 2 3 2.3 1.5e+03 0.3 0.0 28 37 170 179 169 185 0.85 3 3 3.5e-09 2.2e-06 28.5 0.0 4 39 209 244 207 250 0.85
Sequence Information
- Coding Sequence
- ATGCCGGTTTGTCCGAAAGATGGCTCAGCACCAACAAATGATCAGTATATTATATTCGAGCTGAAAACCGATACAGAACCAATGTACAATTATGTGATTACGCAAGTGAAGAAACCACCTCCCGACAATGGGGATCCCAGTACGAAGATCCCCGCCCATTCGGTTGATGGTCAAACCGACGGTGAACATTTGACTAATCCGCAGTATATTATAAGTGTCCAAATACCAGTCGAAGCTGACAAAGAAGAGGCAAAGGAGAACGCACCCAAGAGTCGACGCGCTACTAACCGGAAAAAGCTAGCCGAAGCCCTAGACGCGGTAGTCAATAAGCAGTTCACCATTAGCAAAGCTGCTAGTGTTTTTCACGTGGCAAAGAGCACCCTCTGGAAGGAGGTGAATAAACACACGAATCATCGGCGGAAAAAGGTCGATCAAGAGCTAAACCAAAAGATCGCTGATCGTATTTGTGCTGGGGAATCTCTCTCAGGCATTTCGAGATCCCTTAAAGTGGCCAAGTCCACACTGCATCAGCACAAGGTTCGACTGGCACAGAGTGGTCAGTTGCCACCAAATGTTACGCTCAAACCGCCTGCAGATCCTTTAGAAAGACTTGCTATGAAAGAACGTATCCTGCAAGCATTTCGCGGTTGCCGTGTAAACGGCATGTCGATACGTTTCGCCGCAAAGTTCTTCTCAATACCACCGTCAACGCTATGGAAGCATATACGACGTTTCAAGGCCTCGCAGCAACATAAGGAAAGCGAAAGTACTATTCACACGAGTGCGGGTGAGAACGCCGATGGAATCGAAGACTTGTCAGCAGACCAATCGGTTAGACAAGAAGATGCGGACCTTGATGACTTCGATGTGGACGCCTACTGTGACCAACAAGAGAAGACGGCCAGTGAAGATGGTGACTTTTTGATCAGTTTTGACTTTGAAACCTTCGAGCAGTATGTGAAGAGAGAGCTCGACTGA
- Protein Sequence
- MPVCPKDGSAPTNDQYIIFELKTDTEPMYNYVITQVKKPPPDNGDPSTKIPAHSVDGQTDGEHLTNPQYIISVQIPVEADKEEAKENAPKSRRATNRKKLAEALDAVVNKQFTISKAASVFHVAKSTLWKEVNKHTNHRRKKVDQELNQKIADRICAGESLSGISRSLKVAKSTLHQHKVRLAQSGQLPPNVTLKPPADPLERLAMKERILQAFRGCRVNGMSIRFAAKFFSIPPSTLWKHIRRFKASQQHKESESTIHTSAGENADGIEDLSADQSVRQEDADLDDFDVDAYCDQQEKTASEDGDFLISFDFETFEQYVKRELD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00310947;
- 90% Identity
- -
- 80% Identity
- -