Cver018204.1
Basic Information
- Insect
- Cheilosia vernalis
- Gene Symbol
- -
- Assembly
- GCA_949126925.1
- Location
- OX421360.1:46943495-46944484[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.7e-12 2e-09 37.8 0.0 4 42 99 138 96 140 0.87 2 3 1.5 1.1e+03 0.2 0.0 28 37 170 179 169 185 0.85 3 3 8.1e-10 6.1e-07 29.9 0.0 4 39 209 244 207 250 0.85
Sequence Information
- Coding Sequence
- ATGCCGATTCTTCCGAAATCTGACTCAGCACTAACAAATGATCAGTACGTTATATTCGAGCTGAAAACCGACACAGAACCAATGTACAACTATGTGATTACACAAGTAAAAAAACCACCGCCCGACGGTGGGGATCGCAGTCCGAAGATCTCCGCCCATTCGGTTGAAGGTCAAACCGATGTTGAACATTTGAATAATCCTCAGTATGTCATAAGTGTCCAAATACCAGTCGAAGCTGACAAAGAAGAGGCCAAGGAGAACTCACCAAAGAGTCGACGTGCTACTAACCGGAAAAAGCTAGCCGAAGCCCTAGACGCGGTAGTCAATAAGCAGTTCACTATAAGCAAAGCTGCTAGTGTTTTTCACGTGACAAAGAGCACCCTCTGGAAGGAGGTGAACAAACACACCAATCACCGGCGGAAAAAGGTCGATCAAGAGCTAAATCAAAAGATCGCTGATCGTATTTGTGCTGGGGAATCTCTCTCAGGCATTTCGAGATCCCTTAAAGTGGCTAAGTCCACACTGCATCAGCACAAGGTTCGACTGGCGCAGAGTGGTCAGCTGCCACCAAATGTGACGCTCAAACCGCCCGCAGATCCTTCTGAAAGACTTGCTATGAAGGAACGTATCCTGCAAGCTTTTCGCGGTTGCCGTGTAAACGGCATGTCGATACGTTTCGCCGCAAAGTTCTACTCAATACCACCGTCAACGCTATGGAAGCATATACGACGTTTCAAAGCCTCGCAGCAACATAAGGCAGGCGAAAGTACGAGTACTACTCACACTCATACGGGTGCGGATAAGAACGCCGATGGAATCGGAGACTTGTCAGAAGACCAATCGGTTAGTCAAGAAGATGCTGACCTTGATGACTTCGATGTGGACGCCTACTGTGACCAACAAGCGAAGACGACCAGTGAAGATGGTGACTTTTTGATCAGTTTTGACTTTGAAACCTTTGAACAGTATGTGAAGAGAGAGCTCGACTGA
- Protein Sequence
- MPILPKSDSALTNDQYVIFELKTDTEPMYNYVITQVKKPPPDGGDRSPKISAHSVEGQTDVEHLNNPQYVISVQIPVEADKEEAKENSPKSRRATNRKKLAEALDAVVNKQFTISKAASVFHVTKSTLWKEVNKHTNHRRKKVDQELNQKIADRICAGESLSGISRSLKVAKSTLHQHKVRLAQSGQLPPNVTLKPPADPSERLAMKERILQAFRGCRVNGMSIRFAAKFYSIPPSTLWKHIRRFKASQQHKAGESTSTTHTHTGADKNADGIGDLSEDQSVSQEDADLDDFDVDAYCDQQAKTTSEDGDFLISFDFETFEQYVKRELD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00310947;
- 90% Identity
- iTF_00310947;
- 80% Identity
- -