Basic Information

Insect: Chalcosyrphus nemorum
Gene Symbol: RREB1
Assembly: GCA_949716465.1
Location: OX454332.1:35667185-35673066[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.031 2.7 8.8 0.8 1 21 235 255 235 257 0.93

2 14 0.00029 0.025 15.2 0.2 1 23 267 289 267 289 0.98

3 14 8.2e-06 0.00071 20.0 5.2 1 23 295 317 295 317 0.98

4 14 0.027 2.4 8.9 2.8 2 19 517 534 517 534 0.97

5 14 3.9 3.4e+02 2.1 0.6 1 19 580 598 580 600 0.78

6 14 0.0076 0.66 10.7 0.1 1 23 752 774 752 774 0.97

7 14 0.00015 0.013 16.0 1.7 1 23 783 805 783 805 0.99

8 14 0.0004 0.035 14.7 2.0 1 23 811 834 811 834 0.97

9 14 0.00081 0.071 13.7 2.1 1 23 1184 1207 1184 1207 0.95

10 14 7.4e-05 0.0064 17.0 0.3 2 23 1514 1535 1513 1535 0.97

11 14 0.12 11 6.9 6.3 1 23 1541 1564 1541 1564 0.97

12 14 2.6 2.3e+02 2.7 6.3 1 23 1677 1699 1677 1700 0.95

13 14 0.0072 0.63 10.8 0.5 3 23 1749 1769 1747 1769 0.96

14 14 0.0012 0.1 13.2 4.8 1 23 1775 1797 1775 1797 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.031	2.7	8.8	0.8	1	21	235	255	235	257	0.93
2	14	0.00029	0.025	15.2	0.2	1	23	267	289	267	289	0.98
3	14	8.2e-06	0.00071	20.0	5.2	1	23	295	317	295	317	0.98
4	14	0.027	2.4	8.9	2.8	2	19	517	534	517	534	0.97
5	14	3.9	3.4e+02	2.1	0.6	1	19	580	598	580	600	0.78
6	14	0.0076	0.66	10.7	0.1	1	23	752	774	752	774	0.97
7	14	0.00015	0.013	16.0	1.7	1	23	783	805	783	805	0.99
8	14	0.0004	0.035	14.7	2.0	1	23	811	834	811	834	0.97
9	14	0.00081	0.071	13.7	2.1	1	23	1184	1207	1184	1207	0.95
10	14	7.4e-05	0.0064	17.0	0.3	2	23	1514	1535	1513	1535	0.97
11	14	0.12	11	6.9	6.3	1	23	1541	1564	1541	1564	0.97
12	14	2.6	2.3e+02	2.7	6.3	1	23	1677	1699	1677	1700	0.95
13	14	0.0072	0.63	10.8	0.5	3	23	1749	1769	1747	1769	0.96
14	14	0.0012	0.1	13.2	4.8	1	23	1775	1797	1775	1797	0.99

Sequence Information

Coding Sequence: ATGTTGAAAACCtcaattaaaaagcaattaacCGACATTCCAATGCGAAAAATGGATCGACGAGAATCGACAACATCGGATTCATCCGTTGAACCCATGGATTTGGGACGAACTCCAATcgatataaaaaaagaacagcacagcacagcattACAACAATTGCCAACAGCAACACTTAAAGATGCCATTTTATCTGATGCCAATACAAAATATCATACAATACGTCATGAGTCTGATGCCGACGAATCGACAGATGACAAAGATCGTGATCATCACCAAAGGCGATCGCACAGTCAACATCACTACCATCATCGTCGGCGTGGTGGCAATAGTGGCCGTGACAAACGTACCGTACACTTAGAGTGTACTGATCCACATTCATTGCGAAAGAAATTTCGCTTCAGTAACCATAACGTTCCAGAGTCTGTGATCaatctgaaacaaaaaacatcgaACAATGATACAAcaaagtcatcatcatcaacaacaacagcagcaaatttAACCGCAACAACGAACAATAATGAATCTGGTTTTGTGGACGCAAGCACTAGCCATGTTCTTAACACATCTGCATCATCGGCaggatcatcatcatcctcatcgccgaCATCATCAACATCTGCCTCACCAACAGCGAGTAATGTTGCATCGGCCGTTTCCAGTCCCGAATCGGGCATGGGCGAACGTGACGACATGAAGTACCTTTGCCCAATTTGTGAGGTAGTATCGGCGACACCGCATGAATTTACCAATCATATTCGATGTCATAATTATTCATCTGGGGACACCGAAAATTTCACCTGCCGCATTTGCTCCAAGGTTCTATCATCTGCTTCGTCGCTGGATAGGCACGTTCTGGTGCATACTGGCGAACGGCCCTTCAACTGCAAATATTGCCAACTAACATTCACAACAAATGGCAATATGCATCGTCATATGCGGACCCACAAACAGCACCAGCAACACTACCACCGAAACGGTACcaagggtggtggtggtggtggtggtggtggtggtggtggtacagGTAGCGGTGGTGGTGCCACCAGTTTACCATCAAACGACCAATCGACTGCAGTAGTTAGTACGGTGCCCTCTAAAGCGACAAACCAAAGCAATGGTGTTAGCAATGGTGACACAATCGCAAGTagcgttggtggtggtggtggtggcgaaaGCTACGATAGTGATGGTGGTTGCTCAACGGATTCATCAAGTGCCATGAGCCAAAGTtccaataacaataacaacagcAATACGAACAATAAAAACATTAGCAATTCTAAGCGCAAGAGTACCGACAGCTTGGATGACATGGCCGCGATGAAACGACGCGTGAAGACCAccataaataataacaacatcATCGATAACATGCATGCCACCAGCACTGAGAAGAATACTATCGAAGAAGCTGATGAAGACAtcaaacatcaacaacaacagcaacagaaactCTTTTGTCCAGTATGTAATCGGAACGATTTTGTGGGGATGCTGGCATTGGGCGCTCACATGGACTGTGAGCATTCAGATATCCCCGCAAAGTGTCGCCATTGTGACGTTGTTTTCAAAACCCACAAACAATTGAATGTACACCCATGCACGAGTAAGCTCAAGATAACACACGGCTTTAAGGATCTTACCTTTGTTGActtttcgagcgaaaaattccCACTGATTGCCAAGTCATTGTGCGAACAGAGCCTTCGAGCGCCGGTTAGCAGTCAGAAGTTTGAATGCTCCAAGTGTTATCGAGCATTCCCATGTGCCAGTGCGGTGGAAATCCACGAAAAAGATTGCTCCTCATCAGGGATGAATCTATTTGTCGATGCTCATGATTTTTCAATTCGCAAGCAGAGAGCTTATAGTGAAAGCTCTGGCGGCGCTGACGATGATGAAAATCGGCGAGAAGAGTTCTTCGCTCGGTTGTACTTGAAAAACAAATCGACTGCACAAAGCATGACGAGTCTATCTATATCTTCGCCCTCCCTATCGGATGTTAAATCATCGGAATTGGATAAGACACCAGTGAAGATGTCGCAATTGGAACAGTATCAAGACACCAAAGAGCTGGCCGACATTCAATCGATTCTAAATATAACTTCTTCGTCATCGACGAGTAATTTCCTGCGAAACTTCGAAAACTCGGTAAATGCTCCGATCAGCAATTATGGAGCAGAAAATGGTGAAGAGGAAGCCCAAGATGCCTTCACTTCAGAGTTTCGTAAGATGAAGCTTCGCGGCGAATTCCCGTGCAAGCTGTGCACTGCAGTGTTTCCAAATTTGCGCGCTCTCAAGGGACACAATCGCATTCATCTTAGTGCAGCGGGTCCAGGACCATATCGCTGTAATATGTGCACTTATTCGATTCATGATAAAGCGGCCCTCGTCCGCCATATGCGTACACACAACGGCGACAGGCCATATGAATGTGCCATCTGCAATTATGCCTTCACAACAAAGGCGAATTGTGAACGCCATTTGCGTAACCGCCATGCCAAAACCACACGGGATGAAGTGAAGCGTGCTATTATCTATCATCCATCCGAAGACTCGAATTGCGATGATGCCATGAAGAAGCTGCACATGTTCTCCTCACCTGAATTCGATCAAGACGACATGGAGCAACATCATCCGCCAAAGGATCGTTCCACACCGGTGTCCCATTTGAAGGAAATGCTACAAGCCGAGTCGAAGCCACTTAAAATCCAGGTAAAGAGTTTGGAAAAGCTCATCGACAAAGCAGCACCGTCGTACATTCAGTCAGATGATATGGAAAAAGAGCAAGACCTAGAGGAATCACAGCAAGAGAAAACCTCTCGTCCAATTGACCTCAGCATGGACGCATTGGATTTGAgcaaaaagtccttaaaaactCCTAAACTGGAGGAGAAGCCCGTGCCACAATCACCACCACCCTCGCTGCATAACACACCTGTGCGTGCGCAGCCCGAAGATCCGCCAAACATCGACATGCGAGTGTTGGAGAAGAATCAACAGCTTTTGCTGGCCCAACAGCGGTTGCTTAACGAAGCAATGCCAAAGATGGATCCTGCACACTATTTCCAATTGACGCAACTCTACAGAAACTTGGTTTTCCAGCCATTGCATCCGTTTTTCCTCCAAAACTCATTTCTTTCGAACAACATGGGTGAGCTGAATAAGTTCGCTCCGCTCATGAATCCATTGTTTGATCATGCCGCAGCTGCTAATGAAAACGCCGTCGCGTCAGCTAATAACCATAACCAAAGCTTGCAGCCAAAGTCGGGTGCATCTGAAGAGGTATTGATGAAGCAGCAATCTAATTCACGTGGTCATTCACCTATTCCTGCTAAGAGCCAACTCTTACCGCGAAATCTAACTCCGTCCTCGTCACAAATGCCCCCTATGCCACCACGAAGCCATCCACATATGGTGACGAGTTCGCATTCTTCGGGAATGCTTCCATCGTCTGTTTCGAATTCAGGTCCGGTTAAAATGGTCATCAAAAACGGTGTACTCATGCCGAAGCAGAAGCAACGTCGCTATCGCACCGAACGTCCCTTTGCCTGTGAACACTGTTCCGCTCGGTTTACGTTGCGTTCGAACATGGAACGCCACATCAAGCAACAGCATCCACAATACTGGGCTCAGAGACAACGCAGCGGTCATCACATAATGCGCGGTCGTGCCAACAGCTCCTCTGTTCTTTCCCACATGCAGTCGTCGCACTCCCAATTGGAACCACCACATTCAATGAGCGGCAGTGGCATGATGAGTGCCATCTCAGATCAGGTAAAATACGCCATACTTGCTCAACAGCTTAAGGCCCGCAAGGAGACAGATATTCTGCAACAAGCTCTGTCGCAAGGCTCAAGCAGTGTGCTAGCACAGAATCCTACCACAGCTGCCATAAGCGATCTTCGTAAATCGCTCAGTTCTTCATCGAACACGAATAATGGCAGCATAGAGGATGATGATCCCAAACTAGTGATCgacgaagatgaagaaaaagaagacgccgaggacgatgatgaggatgagtTCGAGGACCGAAAACCagaaaatttaacgaaacttCATGACCAAGATTCAACAACACCAAATGAGGCTGCAAAAAAAGTGGCTGAATCTATTTTGGAGCAAGCCATGAAAGCAACCACCACTAAGAGCATCTATCAGACGTCGACGCCCACTACAATCGATGAAGACCGCTCGCTGGGTAAAGATTTTGGtctaaaattgtcaaaaaatatgaTTGCTCAAGCCGAGTCAGTgggaaaatttttaaaagaagttgCCAGTTCACCATTCAAGGATGAATCCAATGATTTAGCCTCTGTCTCTAGACTCGTTGATAACGCCACTAGTTCGATGTCATTCAACAATTACTTTCGGCCAAGTGATGTCGTAAATCAAATGGAACAGAGCGACGAAGAAGGTCTAGTCGCCTCTGGCAGTGCATCAGAAAGCAATAATTCCGGTCCTGAAGACATGGCCGGCTCACAAGAACCAAAGAAGAAGTCAGCTTATAGCTCTGCACCGAATCGTGTCTCGTGTCCTTATTGCCAGCGAATGTTCCCCTGGTCCAGTTCACTGCGACGGCATATTCTAACTCATACTGGCCAAAAACCGTTCAAATGCTCCCATTGCCCTCTGCTGTTTACCACCAAGAGCAATTGCGATCGCCATCTGCTGCGAAAGCATGGAAATGTTGAATCTGCGGTGTCGTTATATGTTCCCATTGAAGATGTCAATGAACCCCTGCCAGTGCCTAAATCTGTTGAGGAGATTgaattgcaacaacaacaacaacagatgctacaacagcaacagcaacagaaaaaGCTCGAAGAACAAAAGGAACTGGAGaaacttcaacaacaacaacaaacgccAGCAATAGCAGCACAACAGCAAACGCAATTGAAACTCCCAGCCACAATTCCGGAGAATCCCGAGACACCGACGCCGATTTTGAGTCTAACTTCAGGGGGAAAAGTGGACTCAATTCCACAAATTGTCTCATCATCAGAGCTCCCCTTCAAGTGTCACCTCTGTGACAGCTCATTCGCTGAACGGTTTCAATGCCTCGATCATATTAAGATCCATCATGCTCAAGAATTCGCTCTACTTTTGTCAAAGGGCGCCATCGACACTGAAGCCGATCCCAACAACCAAGTGCAGTCAACCGAGGACGACGAGAAACGCGATGAGAGCCGTGGCAAATATCCAGACTACACCAATCGCAAGGTTATATGTGCCTTTTGTGTTCGACGCTTTTGGTCCACCGAAGACTTACGTCGACACATGCGAACGCATTCCGGCGAACGTCCATTCCAATGCGACATTTGCTTGCGTAAATTCACCCTCAAACACAGCATGCTACGCCACATGAAGAAACACAGCGGCGGCAGTCATTCCAGCAATGGCAATGCCAACGCTGCCAACAGTGGCTCCGATATATCCGACGATGAACAACCGCCCTCTAGTGTTATGCTAGCTACAACTCTACGCTCTCACAAAATCCAAGAGCTCTTTGCCAAGGCGAACAGCGAATGGCGCAACAATCGTCTCTCTGGCGAGCACAAGGAGAACATCGAAGAGCACAACAATCAATCCGATCTTATTGGCAATCTTCTTGGCATCAGCGATCAAGGCATCCTCAATAAGCTTCTCTCATCGGCCGATGAAGCCGCTAAATTTCTTGGTGTCGAGAAGTaa
Protein Sequence: MLKTSIKKQLTDIPMRKMDRRESTTSDSSVEPMDLGRTPIDIKKEQHSTALQQLPTATLKDAILSDANTKYHTIRHESDADESTDDKDRDHHQRRSHSQHHYHHRRRGGNSGRDKRTVHLECTDPHSLRKKFRFSNHNVPESVINLKQKTSNNDTTKSSSSTTTAANLTATTNNNESGFVDASTSHVLNTSASSAGSSSSSSPTSSTSASPTASNVASAVSSPESGMGERDDMKYLCPICEVVSATPHEFTNHIRCHNYSSGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCQLTFTTNGNMHRHMRTHKQHQQHYHRNGTKGGGGGGGGGGGGTGSGGGATSLPSNDQSTAVVSTVPSKATNQSNGVSNGDTIASSVGGGGGGESYDSDGGCSTDSSSAMSQSSNNNNNSNTNNKNISNSKRKSTDSLDDMAAMKRRVKTTINNNNIIDNMHATSTEKNTIEEADEDIKHQQQQQQKLFCPVCNRNDFVGMLALGAHMDCEHSDIPAKCRHCDVVFKTHKQLNVHPCTSKLKITHGFKDLTFVDFSSEKFPLIAKSLCEQSLRAPVSSQKFECSKCYRAFPCASAVEIHEKDCSSSGMNLFVDAHDFSIRKQRAYSESSGGADDDENRREEFFARLYLKNKSTAQSMTSLSISSPSLSDVKSSELDKTPVKMSQLEQYQDTKELADIQSILNITSSSSTSNFLRNFENSVNAPISNYGAENGEEEAQDAFTSEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRIHLSAAGPGPYRCNMCTYSIHDKAALVRHMRTHNGDRPYECAICNYAFTTKANCERHLRNRHAKTTRDEVKRAIIYHPSEDSNCDDAMKKLHMFSSPEFDQDDMEQHHPPKDRSTPVSHLKEMLQAESKPLKIQVKSLEKLIDKAAPSYIQSDDMEKEQDLEESQQEKTSRPIDLSMDALDLSKKSLKTPKLEEKPVPQSPPPSLHNTPVRAQPEDPPNIDMRVLEKNQQLLLAQQRLLNEAMPKMDPAHYFQLTQLYRNLVFQPLHPFFLQNSFLSNNMGELNKFAPLMNPLFDHAAAANENAVASANNHNQSLQPKSGASEEVLMKQQSNSRGHSPIPAKSQLLPRNLTPSSSQMPPMPPRSHPHMVTSSHSSGMLPSSVSNSGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQYWAQRQRSGHHIMRGRANSSSVLSHMQSSHSQLEPPHSMSGSGMMSAISDQVKYAILAQQLKARKETDILQQALSQGSSSVLAQNPTTAAISDLRKSLSSSSNTNNGSIEDDDPKLVIDEDEEKEDAEDDDEDEFEDRKPENLTKLHDQDSTTPNEAAKKVAESILEQAMKATTTKSIYQTSTPTTIDEDRSLGKDFGLKLSKNMIAQAESVGKFLKEVASSPFKDESNDLASVSRLVDNATSSMSFNNYFRPSDVVNQMEQSDEEGLVASGSASESNNSGPEDMAGSQEPKKKSAYSSAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAVSLYVPIEDVNEPLPVPKSVEEIELQQQQQQMLQQQQQQKKLEEQKELEKLQQQQQTPAIAAQQQTQLKLPATIPENPETPTPILSLTSGGKVDSIPQIVSSSELPFKCHLCDSSFAERFQCLDHIKIHHAQEFALLLSKGAIDTEADPNNQVQSTEDDEKRDESRGKYPDYTNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDICLRKFTLKHSMLRHMKKHSGGSHSSNGNANAANSGSDISDDEQPPSSVMLATTLRSHKIQELFAKANSEWRNNRLSGEHKENIEEHNNQSDLIGNLLGISDQGILNKLLSSADEAAKFLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01223735;
90% Identity: iTF_00241708;
80% Identity: -