Csis018710.1
Basic Information
- Insect
- Chalcis sispes
- Gene Symbol
- -
- Assembly
- GCA_949987625.1
- Location
- OX465096.1:29386233-29389123[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.2 7.8e+02 2.1 0.1 3 20 124 140 122 142 0.90 2 14 0.00091 0.17 13.7 3.1 1 20 148 167 148 170 0.95 3 14 0.0011 0.21 13.4 0.7 1 23 176 199 176 199 0.90 4 14 6.3e-06 0.0012 20.5 0.9 1 23 205 227 205 227 0.98 5 14 6e-05 0.011 17.4 1.1 1 23 375 397 375 397 0.97 6 14 0.0033 0.61 11.9 0.1 2 20 407 425 406 427 0.93 7 14 0.00033 0.061 15.1 2.6 1 20 449 468 449 471 0.92 8 14 0.00054 0.1 14.4 0.5 1 23 476 499 476 499 0.95 9 14 1.6e-06 0.0003 22.3 0.3 1 23 505 527 505 527 0.98 10 14 0.0026 0.48 12.2 6.5 1 23 534 556 534 556 0.98 11 14 0.00019 0.035 15.8 0.7 3 23 564 584 562 584 0.97 12 14 0.00042 0.079 14.7 0.3 1 23 590 613 590 613 0.96 13 14 2.2 4.2e+02 3.0 0.6 1 23 627 649 627 649 0.88 14 14 0.015 2.8 9.8 0.0 2 23 898 919 897 919 0.96
Sequence Information
- Coding Sequence
- atggagacaaacgaaAATGAGCAATATGTTACATTTTCTTTGGACAGTGTACATGaaggtATACAAGATAACATATCTCATGAAGAAATATGTGAACCTGTTGATGAATGTGTTATACAAGATGGTTTAACTGATGGTTTAACTGACGTCACAGTAACTGATGTAAATCAAGATATAACTGAAACACAAGTTGCTGTAGAAATTTTAACAGAAAATTCTGAAGATGAAGGACAGAGTTCTGTAGTGTAtcctatttatataaaaaaagaaatttcacagCAATTTACAACTGGTGATGAATCTATGGCAGTTGAAGCTTTGCGTCAATTGGGTGGAATGTATCCATGCtttgacgataaaaaaattgcatgttCTAATTGTGCAAACATGTTTAcacaaacaaaattgactgaacATCAGACTGTTTGTTTATCTGATAAACATAATTGTAATACATGtggtgaaaaatttgaaagaaaaatagatttaaataatcatatggTGTGTCATCAAGTAGATCGTCCACATGCCTGTAGAACATGTGGAAATTTATTTCGATCCAAAGCTAACTTACAAACACATATGGTTGAAGTTCACCAAGTTGAGCGTCCTCATAAATGTACAGTTTGTGGAGCTGACTTCCAAAGACCTTCTAGTTTATCCAATCACATGAAAATTCATAGTTATGTTGCTGGAAGAGCATTAATGCAAGCTCAAAGTAACAACATTTCTGCAAAAGTTGAAACCCTAAAAAATGCTTCAGATTCACAAGAAACACCAGTTTTGACTACTGTTCAAactatacaaaattttgaaattcctcAAGTACAATGGGCTGTGCaaacatataattttactaCTGATCAAGGCAATATTGATAGCCTTACCAGTCAAACTGATAAAATTGACACATTACAAGAATTTACAGTACTTCCTAATGGGGAAGTTGCTCAATTTGAATATGTTCCACAAAATACTGTAAATAATCAAATTGGTCAACAGTACAGTTTAACTttgaattcttttaataatactgATACATTGGTGAAAGCAGATGCTACCAATTTTAGTAATGAAAACAGAAAAGCttttattgaaattgatttacatgaaaataaaggGCATAACTGTAGTCAATGCGGTGTAAGTTTTGCACGTGCAACTTCTTTAACTTTACATGAAAAAACACATGTTAAGAGTGATTGGGCATCCCCTGTAGAATGTGAATATTGTGATAAACAGTTTCAAGATTCTAATTTTTTAGCCACTCATCAAGCATCATGCACAaagaaattaatgcaaaataattCTGAGTCTAATGCATCTAACCCAAAGTGGGGCAAGCATGCTTGTTCAGAATGTGGAAAGAAATttacaacaaaacaaaaaatgtttagacaCCAATGGATTCATCGAAAAAAAACGCACTCTTGTGAAGTTTGTGGCACACAGTTTGAAAAGCAATCTGAACTAGATGAACATAGATTGTCTGCTCATCCAGGAGATTCACAATTTACTTGTAGTGAATGTGGTAAAAGTTTTGTATCCAGACAAGGACTTTGGGAACATGGTAGAACTCATGCAGGAAGTCCAGCTTACTTTCATTGTGATACATGTTCAAAAACATTTACTTCAAGGCAAGGTTATTTAATTCATCATCGTACTCATACAGGAGAACGACCTTATGGTTGTAAATTTTGCTGGAAATCATTTCGAGATGGAGGTACTTTAAGGAAGCATGAAAGAATACATACTGGAGAAAGGCCTCACGTTTGTCCATTATGTACTAGAGCATTCAATCAGAAAGTAGTCTTACGAGAACATGTTCGATGGGTCCACGCTGCAGGAAAAAATGAAACAGAATCTACTGGACCACCTTTTCCATGTCCTTTATGTGGAAGTTTAAATCAAGATAGAGATGAATTATGTGCTCACATTGTCAAGCACTCAGATCAAATGATAGCAGAAGCTAaggctaaaaataataatgcgctTACAAAAACaaagcaacaaaaaaagaaaacaaaagctaCAGATGGAAAAACAAAAGCACCTCAATCAAAAGCAATAGGAGAAAGAGTGATTACTGCTTCGGAGCAAAATGAAGCTTTACTTTCTATTACAGAACAAGTAGATACTTCTACAGAAACCCAAGATACTTACTTAgtagtaaaaaatgaatatgatGATGCAGTGTGTATTAAAGCTTATACAAGTCAGAATAATGCTTCTCAAACAGATGTGCAAAATGAATCTATTAATGTTATAACAATTGCTAAATCTGATATTAAAGATGAAGATGGAACagttaatgttattaataatcaGGGAAATATCAATACAATGCATTTGATACCTTTCACTACATCTGGTGAaacaattcatttaatttctactaataaacaaaataatactttacacttaatatcaaaacaaaatgaaaatttacctgTTCTAGCAATTCCTAATCCTCAAACCAATGAAAGTTTTTCAAACCAAATCtcagaaataaataattctgaCTTATCCATGGATGTAGTTACAAATGAATCTACAATTGATACTGAAGATTGTAATGAAACTATTCATACAGAAACTATGATAATAGAACCAGTTTGTATAAAACCTAATGATATTGAACATCAAGAAAttgtaaatgaagaaaatagTGATGATGAAAGTGAAGAATTAGTGTGTGGTATTTGCGGAAATgattttgatgataaaaatgttttgatggaACATGTAAAAATTCACATATAA
- Protein Sequence
- METNENEQYVTFSLDSVHEGIQDNISHEEICEPVDECVIQDGLTDGLTDVTVTDVNQDITETQVAVEILTENSEDEGQSSVVYPIYIKKEISQQFTTGDESMAVEALRQLGGMYPCFDDKKIACSNCANMFTQTKLTEHQTVCLSDKHNCNTCGEKFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKANLQTHMVEVHQVERPHKCTVCGADFQRPSSLSNHMKIHSYVAGRALMQAQSNNISAKVETLKNASDSQETPVLTTVQTIQNFEIPQVQWAVQTYNFTTDQGNIDSLTSQTDKIDTLQEFTVLPNGEVAQFEYVPQNTVNNQIGQQYSLTLNSFNNTDTLVKADATNFSNENRKAFIEIDLHENKGHNCSQCGVSFARATSLTLHEKTHVKSDWASPVECEYCDKQFQDSNFLATHQASCTKKLMQNNSESNASNPKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGTQFEKQSELDEHRLSAHPGDSQFTCSECGKSFVSRQGLWEHGRTHAGSPAYFHCDTCSKTFTSRQGYLIHHRTHTGERPYGCKFCWKSFRDGGTLRKHERIHTGERPHVCPLCTRAFNQKVVLREHVRWVHAAGKNETESTGPPFPCPLCGSLNQDRDELCAHIVKHSDQMIAEAKAKNNNALTKTKQQKKKTKATDGKTKAPQSKAIGERVITASEQNEALLSITEQVDTSTETQDTYLVVKNEYDDAVCIKAYTSQNNASQTDVQNESINVITIAKSDIKDEDGTVNVINNQGNINTMHLIPFTTSGETIHLISTNKQNNTLHLISKQNENLPVLAIPNPQTNESFSNQISEINNSDLSMDVVTNESTIDTEDCNETIHTETMIIEPVCIKPNDIEHQEIVNEENSDDESEELVCGICGNDFDDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00969025; iTF_00969842; iTF_00692325; iTF_00693230; iTF_01219237; iTF_00690518; iTF_00691369;
- 90% Identity
- -
- 80% Identity
- -