Msti014086.1
Basic Information
- Insect
- Megastigmus stigmatizans
- Gene Symbol
- -
- Assembly
- GCA_900490015.1
- Location
- UELV01156748.1:1266-4317[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.4 4.5e+02 2.5 0.1 3 21 121 138 120 139 0.89 2 14 0.00078 0.1 14.0 2.3 1 20 145 164 145 167 0.94 3 14 0.00081 0.11 13.9 0.4 1 23 173 196 173 196 0.90 4 14 7.1e-06 0.00095 20.4 0.9 1 23 202 224 202 224 0.98 5 14 4.6e-05 0.0061 17.9 0.6 1 23 362 384 362 384 0.97 6 14 0.0059 0.79 11.2 0.1 2 20 394 412 393 414 0.93 7 14 0.0028 0.37 12.2 2.2 1 20 436 455 436 458 0.92 8 14 0.0016 0.22 13.0 0.3 1 23 463 486 463 486 0.95 9 14 1.2e-06 0.00016 22.8 0.3 1 23 492 514 492 514 0.98 10 14 0.0024 0.33 12.4 6.3 1 23 521 543 521 543 0.98 11 14 0.00044 0.058 14.8 0.4 3 23 551 571 549 571 0.97 12 14 0.0005 0.067 14.6 0.2 1 23 577 600 577 600 0.96 13 14 0.041 5.5 8.6 0.3 1 23 614 636 614 636 0.97 14 14 0.16 21 6.7 0.0 2 23 894 915 893 915 0.95
Sequence Information
- Coding Sequence
- ATGGAGACAAATGAAAACGAACAGTATGTTACATTTCCACTGGATAATGTACACGAAGGTATTCAAGATACTATATCTCATGAAGAGATATGTGAACCAGTCGACGAGTGTGTTCTACAAGAAGGTTTAACTGAAGTTACAGTCGGTGATATGAGCCAGGATGTTACAGAAGCACAAGTAGCTGTAGAAATTCTAGCAGAAAATTCTGAGGATGAAGAACAAAATTCGGTTGTATATCCTactatttatataaagaaagaaagtTCACAACAATTTACAACTGGGGATGAATCAATGGCAGTTGAAGCTTTACGCCAGTTAGGTGGAATGTATCCatgctttgaaaataaaaaagttgccTGCCCTAATTGTGCTAATATGTTTGCACAATCAGAGCTGAGTAAACATCAAACTACATGCATGCCAGATAAGCATGCATGTAACACATGTGGTGAGaagtttgaaagaaaaatagatttaaataatcATATGGTTTGCCATCAGGTGGATCGGCCTCATGCTTGCAGGACTTGTGGAAATTTATTTCGTTCTAAAGCCAATTTGCAAGCACATATGGTTGAAGTTCATCAAGTTGAACGACCTCACAAATGTACAGTTTGTGGAGCAGATTTTCAAAGACCATCAAGTTTATCTAATCACATGAAGATTCATAGTTATGTTGCAGGAAGGGCATTAATGCAAGGGCAAGGAAACAATGCAATTACAAACGTTgagacttttaaaaatgtttctgaTTCACAAGAAGCTTCAGTTTTGACTACCACTGTTCAAACgatacaaaattttgaaatacctCAAGTACAGTGGGCAGTACAGACGTACAATTTTACTACTGACCAAAGTAGTGTTGATGGCCTTGCTAATCAATCTGACAAAATAGACACATTGCAAGAATTTACTGTATTGCCCAACGGAGAAGTAGCCCAATTTGAATATACCCCACAAAACACAATAGACAATCAAATTGGTCAGCAGTATAGTTTaactttaaattcatttaataactctgatagagaaaataaaagaacttaTGTTGAAATTGATTTGCAAGAAAATAAAGGACACACTTGCAGTCaatgtggtgttagttttgctCGTGCAGCATCATTGACTTTACACGAAAAAAGTCATATAAAAAATGAGTGGGGTTCTCCAGTAGAATGTGAATATTGTGATAAGCAGTTTCAAGATGCTAACTTTCTAGCTACACATCAAGcatcctgcaaaaaaaaattaatgcaaaataataCTGAATCGAATAGTTCTAATACCAAATGGGGGAAACATGCTTGTTCAGaatgtggaaaaaaatttatgacaaaacaaaaaatgtttagaCACCAATGGATTCATAGGAAAAAAACACATTCCTGTGAGGTTTGCGGTGCACAATTTGAAAAACAATCTGAACTTGATGAACATAGATTATCAGCTCATCCTGGGGATTCACCATTTACTTGCAATGAATGTGGTAAAAGCTTTGTGTCTCGACAAGGACTTTGGGAACATGGCAGAACACATGCAGGAAGTCCAGCTTACTTTCATTGTGAAACTTGTTCCAAAACTTTCTCTTCAAGGCAAGGCTATTTGATACATCATCGAACACACACAGGAGAACGTCCATATGGTTGCAAATTTTGTTGGAAAGCTTTTCGTGATGGTGGTACACTAAGGAAACATGAAAGAATACATACTGGAGAGAGACCTCATGTTTGTCCATTGTGTTCAAGAGCATTTAATCAAAAAGTAGTCTTACGCGAACATGTGAGGTGGGTGCATGCTGCaggaaaaaatgaaagtgaagtTACCGAACCACCTTTTCCATGTCCTCTGTGTTCAACTTTAACTCAAGATCGAGATGAATTGTGTGCTCATATTGTAAAGCATTCAGATCAAATGATAGCAGAAGCTAAAGCTAAAACTAATAATGCAACTCCAAAAACAAAACcacaaaaaaagaaaggtaaAGCATCAGAAGGAAAGACAAAAGCAACGCAATCGAAAGCATCAGGTGGAAGAGTGATTTCTGCATCTGAACAGAATGACGCTCTTCTCTCTATTACAGAGCAAGTTGATAATTCAACAGAAACACAAGATACTTATTTAGtagtaaaaaatgaatatgatGATGCAGTATGCATTAAAGCTTATACGAGATCAAATGATATTTCTGATACTGATGGACAAGGTGAATCTATCAATGTAATAACAATTGCTAAATCTGATATTAAAGACCAAGAAGGAACAGTTGATGTCATGAACAGGCAGGGTAATATTAATACAATGCATTTGATACCTTTCACTACATCTGGTGAAACAATTCATCTTATTTCTACTactaaacaaaataatactttACATTTAATATCAAAGCAAAATGAAAACTTACCTGTTTTAACAATTCCTAATCCTCAGACTAATGAAAGCTTTACAAACCAAATCTCCCAAATAACTGATTCTGCAATGGAAGTGGAGTCATCAATGGAAATGATTACAAATAATTCTCCAACCAACAATGAAGAATCCCCAGAAACTGTTCATGAAGAAACTATTATAATTGAACCTATTCAGCTTATATCTGATGAACTTGAACCTAATGATATTGTGCACAATCAAGTAGCAAATGAAGAAGACAGTGATGATGAGAGTGAGGAATTGGTATGTGGAATTTGTGGGAATGACTTTGATGATAAAAACATATTGATGGAACACgtgaaaatacatatataaacgaCTCTGTTAACTCTTTAACACcgaaatttctattttttgcttTGCAGCTTTTAACACTAtgactttttatataaatattttggaaaaaattttaaatactgcaATCAAATAGttcaaaacttaattttttaaataaaagtttag
- Protein Sequence
- METNENEQYVTFPLDNVHEGIQDTISHEEICEPVDECVLQEGLTEVTVGDMSQDVTEAQVAVEILAENSEDEEQNSVVYPTIYIKKESSQQFTTGDESMAVEALRQLGGMYPCFENKKVACPNCANMFAQSELSKHQTTCMPDKHACNTCGEKFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKANLQAHMVEVHQVERPHKCTVCGADFQRPSSLSNHMKIHSYVAGRALMQGQGNNAITNVETFKNVSDSQEASVLTTTVQTIQNFEIPQVQWAVQTYNFTTDQSSVDGLANQSDKIDTLQEFTVLPNGEVAQFEYTPQNTIDNQIGQQYSLTLNSFNNSDRENKRTYVEIDLQENKGHTCSQCGVSFARAASLTLHEKSHIKNEWGSPVECEYCDKQFQDANFLATHQASCKKKLMQNNTESNSSNTKWGKHACSECGKKFMTKQKMFRHQWIHRKKTHSCEVCGAQFEKQSELDEHRLSAHPGDSPFTCNECGKSFVSRQGLWEHGRTHAGSPAYFHCETCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNESEVTEPPFPCPLCSTLTQDRDELCAHIVKHSDQMIAEAKAKTNNATPKTKPQKKKGKASEGKTKATQSKASGGRVISASEQNDALLSITEQVDNSTETQDTYLVVKNEYDDAVCIKAYTRSNDISDTDGQGESINVITIAKSDIKDQEGTVDVMNRQGNINTMHLIPFTTSGETIHLISTTKQNNTLHLISKQNENLPVLTIPNPQTNESFTNQISQITDSAMEVESSMEMITNNSPTNNEESPETVHEETIIIEPIQLISDELEPNDIVHNQVANEEDSDDESEELVCGICGNDFDDKNILMEHVKIHI*TTLLTL*HRNFYFLLCSF*HYDFLYKYFGKNFKYCNQIVQNLIF*IKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00309683;
- 90% Identity
- iTF_00969025;
- 80% Identity
- -