Caur022894.1
Basic Information
- Insect
- Cetonia aurata
- Gene Symbol
- -
- Assembly
- GCA_949128085.1
- Location
- OX421885.1:6468004-6469614[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 5.1e-05 0.72 11.6 0.1 18 52 153 187 150 188 0.88 2 8 0.014 1.9e+02 3.8 0.1 22 45 185 208 182 219 0.83 3 8 0.018 2.6e+02 3.4 0.0 21 45 240 264 236 270 0.89 4 8 0.032 4.6e+02 2.6 0.0 19 46 266 293 250 301 0.75 5 8 0.18 2.6e+03 0.2 0.2 21 43 296 318 289 323 0.80 6 8 1.2e-05 0.17 13.6 0.1 21 52 324 355 318 357 0.92 7 8 0.55 7.7e+03 -1.3 0.0 22 46 409 433 400 439 0.76 8 8 0.013 1.9e+02 3.9 0.1 21 45 436 460 426 466 0.83
Sequence Information
- Coding Sequence
- atggaTGAAATTGCATATTACGATTTAGATAAAATCTGTCGAGTTTGTCTTaaagaaaagcaaaatatgttGTCTCTGAATGATAAAGATAATGCAAGCATGTTTATTTCTTGCACTTCTTTAAATATTGATGAGAAGATGCCTATAAAACTTTGTAGTAAATGCAGAACAAATATGAAcattgcatataattttaagCAATTATGTTTAAAATCACAACAAATATTAGAACAATATCTAGagaatgaacaaaataaattgaataatattACTTGTTTGGAGAACATAGAAGTAAATGAATTGGCAGTAGAAATTgagaaagaaaataagaaaataaatatagtacataAACCAAAAGGAAGGAAAAGGAAAGCAAAACTTGATCGTTCgtttaaatgttctttttgtcCAGAAAGTTTTGACTTAAAATGTGATTTAGATACTCACCTTATTTCACATCCAACAAGTGAAGATGTTGCACTGTGTACTATATGTAATAAGTCATTTTCCAATGCAAGAGTTTTAAAAAGGCATGTAAAAATTCATATGAAAAATAAACCATTTCAATGTGAGGTATGTAAGAACACATATTCCGAATCAGGTAGTTTAACCAGGCATTTAAGAAAACATCGAGGGGAGAAACGTCATCTATGCACAGTCTGTGGGAAAGGTTTCTATGAAGCTAATGTTTTAGCCGTGCACATGAGAATACATACTGGGGAGAAGCCGATAAAATGTGATATTTGTAGCAAACGGTTTTCAGATCCTAATGGTTTAAGAAGTCATTTGAAATCTCACACTGGAGAGAAGAAATATAAGTGTGATATCTGTGATAAATCTTTTGCACATTCGtttgttttaaagaaacatttaagAGTCCATAGTGGTGAAAGACCATACCTATGTTCTGTGTGTGGTAAAAGCTTCACACAGagTCATTATGTCCCAATACATATGAGGCAACATACAGGTGAGCAACCGTTTACTTGTAGTGTTTGTAATAAGGCATTTTCACAGAATAACCAACTGGAAATGCACATGCGAATACATACTGGAGCTAAACCATATATTTGTGCTgtttgtGGAAAACCTTGTACGAGATCGGGCGATTTAGCTATTCATATGAGAAGCCATACCGGTGAGCGACCGTACGCTTGCTCCAAATGTCCAAAACGGTACTCCACGTCCTCTCATTTAACCGTGCACATGCGCACTCATAGTGGCGAGAAGTCGCACGTATGTACTGTATGTGGAAGGGGATTTGCAGAATCCCAGGGATTAAAATCTCATGCACGGGTACACACAGGCGAAAAGCCTTACCAATGCTACATCTGTGGACAGTGTTTTGCGCAGTCTGGCGGGTTAAATGCTCATAATAAAATTCACGGtctcaaaaagtaa
- Protein Sequence
- MDEIAYYDLDKICRVCLKEKQNMLSLNDKDNASMFISCTSLNIDEKMPIKLCSKCRTNMNIAYNFKQLCLKSQQILEQYLENEQNKLNNITCLENIEVNELAVEIEKENKKINIVHKPKGRKRKAKLDRSFKCSFCPESFDLKCDLDTHLISHPTSEDVALCTICNKSFSNARVLKRHVKIHMKNKPFQCEVCKNTYSESGSLTRHLRKHRGEKRHLCTVCGKGFYEANVLAVHMRIHTGEKPIKCDICSKRFSDPNGLRSHLKSHTGEKKYKCDICDKSFAHSFVLKKHLRVHSGERPYLCSVCGKSFTQSHYVPIHMRQHTGEQPFTCSVCNKAFSQNNQLEMHMRIHTGAKPYICAVCGKPCTRSGDLAIHMRSHTGERPYACSKCPKRYSTSSHLTVHMRTHSGEKSHVCTVCGRGFAESQGLKSHARVHTGEKPYQCYICGQCFAQSGGLNAHNKIHGLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00308231;
- 90% Identity
- iTF_00308231;
- 80% Identity
- iTF_00308231;