Basic Information

Insect: Ceratitis capitata
Gene Symbol: lolal
Assembly: GCA_000347755.4
Location: NW:3100304-3149864[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.73 1.3e+03 -1.3 0.3 16 25 486 495 485 495 0.86

2 5 3e-11 5.2e-08 31.9 0.0 1 38 606 644 606 649 0.89

3 5 9.2e-14 1.6e-10 40.0 0.0 2 39 661 698 660 701 0.94

4 5 1.1e-17 1.9e-14 52.5 0.0 1 45 715 760 715 760 0.98

5 5 3.1e-19 5.4e-16 57.5 0.0 1 43 767 810 767 812 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.73	1.3e+03	-1.3	0.3	16	25	486	495	485	495	0.86
2	5	3e-11	5.2e-08	31.9	0.0	1	38	606	644	606	649	0.89
3	5	9.2e-14	1.6e-10	40.0	0.0	2	39	661	698	660	701	0.94
4	5	1.1e-17	1.9e-14	52.5	0.0	1	45	715	760	715	760	0.98
5	5	3.1e-19	5.4e-16	57.5	0.0	1	43	767	810	767	812	0.96

Sequence Information

Coding Sequence: ATGGCGTCCAGAAGTCACCAGTATTTTAGTTTGCGTTGGAACAACTACCAAAACACCATGACATCGGTGTTTCAGCAGTTACGGGAGGATTTGTCCTTTGTAGACGTAACTCTTTCATGTGAACACGGTTCGCTAAAAGCACATAAGgtTGTCTTATCTGCGTGctcttcatattttcaaaagctgCTCTTAGAAAATCCTTGTAAGCATCCAACCATAATACTACCTGGCGATATAATATTCACAGACTTGAAGAccattattgattttgtttatcgTGGCGAAATAGATGTTACCGAATCTGAGTTGCAGGGCTTATTACGTACTGCCGAACAGTTGAAAATAAAGGGCCTTTGCGAGACAGCTGAAAACACGGACGATTTGAACGACGCTGCAACCGCCACAATCACAGTATCGGAGAATATACAGCAGGCAGTGGTCGGCAATATTGTTAATGCCCCAGTAGCAACCAGTCAACTCTCGCCCAAtatacaacatcaacaacagcagcaacaaattgcAACTAATACCGCAGTGCTTACGCACAATATTGGCAACATCACCACTGCAAATTCGCAACAAAttggcacaacaacagcaaacactGCTGGCCAGTTGCTGACAGCGGGCTCATCaggccaacaacagcaaataggACGTAAATCACGTGTACGTAAGCGTTCAAAATCTCCGGatctacaacagcaacaagtgcATAATAGCCAACAACAAGTGCAACAACATccacaaacaattttaatacaaaatcaaaatcaagccGCTATCGTTAGTTTACAACAGACCTCGTCTGGCAATTATATACCAGTGTCCGGAGGACAAACGGTCACCACCAGTGTAGCTGGCCAGCAGCAAACTGTAATAACCGCTGACGAATCAGATACGGACAAACCGGCGCTGTCGAAAATCTGTAAAACAGAAACAGCATCAGCGTCGCCTGCGTCGAGCGCATCGGGTGTATCGGGTTCGAATAATGCCGGAAGCGTAACAACAGTTGCAGCACCAGGTACAGCGATTGTTACGCAGATAGTAGTGGCACGAGACGGCAAAGATAAAAATATGACTAGTTTAGGAATGGGAATgaatGGCGGAATTCTTGGCGTGCCAATGGGCTTTTTAGATTTTGCACCAGAACCACCAGCACCTTCAGCTACACCTGTAACAGTAACAGAACACGTTGACTTATCATGTAATCCTAATACAGACACACGAGATTTATCAAACCCCACCGAAGCACTTGATATCGACAATCACTTGGCTCAACATATGATTCAACGGCTTGATCAATCTCCGATGCATGCTATTCATCATCAAACGGGCGATGAAAGCAATTCGAATTTAGTTCAGCATATTAAGAGTGAGGTGATTGATgcgaaacagcaacaacaagtacaacagcaacatcatcagcagcagcaacaacaattgcatgcTCAACAACTTTCACAGAATCAAgcacagcaacatcaacaacaacatcaagtaCATCAACAGCAAacttcacactcacacacaacaCACGTCCAGCAACAAGCGCAAACACATCAGGATATCACAGGCGCAACAGTCATGGAAATCGATCCTAGCCAAATTAAGCACGAACCGGGAATGATCATAACACCGGAAATCGTCAATATGATGACAACCGGACATATGGatatgtataactCCGATACAAGTGAAGATTCAATGATGATTGCAAATGGCTCGCCAAACGACCAAAATGAGCCACACTATACCAATTTAGACCAACAACATGTGGATAGTAAAGGTCAGTTTAATGGTCCCAAGACTTGGACTCAAGATGATATGAATTCAGCTTTAGATgcattgaaaaatcaaaatatgagCCTTACAAAGGCTTCAGTTACATATGGTATACCATCGACGACTTTATGGCAACGTGCCCATCGTATGGGCATTGAAACGCCAAAGAAGGAAGGTGGTACTAAATCATGGAATGAGGATTCTTTAAATAATGCTTTAGAAGCCCTGCGCTCGGGACAAATATCAGCCAATAAAGCGTCAAAGGCTTTTGGTATACCATCATCGacattatataaaattgcaCGTCGAGAGGGCATACGCTTAGCGGCACCATTCAATGCAGCACCAACAACGTGGACCCCAGAGGATTTAGAGCGTGCATTAGAGGCAATACGCGCCGGTCATACGTCCGTTCAAAAAGCCAGTGCCGAATTTGGTATTCCAACAGGTACACTTTATGGTCGTTGTAAACGCGAGGGCATCGAACTGTCTCGTTCAAATCCCACACCTTGGTCAGAAGACGCAATGAATGAAGCATTAAATTCAGTACGAATTGGCCAGATGTCGATCAACCAGGCCGCGATTCATTACAACCTTCCATATAGCTCTCTGTATGGTCGCTTTAAACGTGGAAAATATGACGTTACTAATACCAGTAGCACCTCCATTAATAATGCATCAGGAAACACTTCAGGAAGCATCGAAATTATCGAACATAGTCAAGAAAACTCgTTACATGTGTTTCAGCAACAGTTCCAGTATAGTCCGTCACCACATCAACAGGCCCAGCATGGCGGTCAATCTCAATCACAGACACCTCAACATTTAACTCAACATGTTGTGCACATTCAACAGCCACAGACTCATCATCAGCAACAAGTACAtgctcagcagcagcaacatatccaacaacaacaagatgtTGTTACATCCAGCAGCCAGGTGGCACATAGCAGTGCATCAGGcggacagcaacaacaaattcaacagATCTATCATCATCACAGCACGCCGGAAAGAAGTTGA
Protein Sequence: MASRSHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSSYFQKLLLENPCKHPTIILPGDIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENTDDLNDAATATITVSENIQQAVVGNIVNAPVATSQLSPNIQHQQQQQQIATNTAVLTHNIGNITTANSQQIGTTTANTAGQLLTAGSSGQQQQIGRKSRVRKRSKSPDLQQQQVHNSQQQVQQHPQTILIQNQNQAAIVSLQQTSSGNYIPVSGGQTVTTSVAGQQQTVITADESDTDKPALSKICKTETASASPASSASGVSGSNNAGSVTTVAAPGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPNTDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHAIHHQTGDESNSNLVQHIKSEVIDAKQQQQVQQQHHQQQQQQLHAQQLSQNQAQQHQQQHQVHQQQTSHSHTTHVQQQAQTHQDITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPNDQNEPHYTNLDQQHVDSKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVTNTSSTSINNASGNTSGSIEIIEHSQENSLHVFQQQFQYSPSPHQQAQHGGQSQSQTPQHLTQHVVHIQQPQTHHQQQVHAQQQQHIQQQQDVVTSSSQVAHSSASGGQQQQIQQIYHHHSTPERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00979276;
90% Identity: iTF_00192007;
80% Identity: iTF_00303895;