Crub022936.1
Basic Information
- Insect
- Cerastis rubricosa
- Gene Symbol
- -
- Assembly
- GCA_949152445.1
- Location
- OX424536.1:15249731-15251545[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-12 2.1e-09 38.3 0.0 1 38 15 53 15 57 0.93
Sequence Information
- Coding Sequence
- ATGCCGCGTAATTATAAAAGGACTACTTCTAGACAAGAATGGGATCCGGATAGCATGAAAAAAGCCGTTCAAGCCGTATTTGATGGCACCATGGGTTACTTGAAAGCTGCCAAAACTTTTGAGGTACCAAAATCAACATTACAAGATCGAGTAAACCGATTTAGACAGAACAATGATCTAGACTCTTCCACACGCAAAGGCTTGGGACGATTTAAACCGATTTTCTCGACTTCCCAAGAACAAAGTCTGGTTGAGCATGTCTTGATCATGGAAAAACGATTATTTGGTCTCACGTATAAAGATCTTCGACGCTTAGCGTATCAGCTCGCAGAAGCAAATAGTATTGACCATTGTTTCAATAAGGTTTATAAACTAGCGGGAGAAGATTGGTTAGCTGGGTTCATGAAACGACACCCACAATTATCATTGCGTGCTGCCGAGCCGACGTCGGTGGCAAGAGCGATGGGATTTAACATGGTCAGTGTCAACAAATTTTTTGATTTGCTAGAGGAAGTTATCGATCAATATAAATTTTTGCctacaaacatttacaatgtgGATGAAACGGGCCTGACAACGGTACCAAAAAGACAAAGTAGAATAATCGCTTTAAAGGGAAGAAAACAGGTCGGTCTGGCTAGTTCAGCGGAAAGAGGCCAGTTGACTACTGCTGTCCTGTGTGTGTCTGCGTCTGGAAATTATGTTCCTCCGCTGCTAATATTTCCACGAGTTCGGATGAAGGCTGAACTTCTAGATGGTGCTCCACCAGGGACAGTTTCGGTTTGCCATCCAAGTGGCTGGAtacaaagtgatatttttgttgaGTGGTTGAATCACTTCATATCATCAGTAAAGCCCAAAAAAGAAGATCCTGTCCTTCTTTTACTCGATGGGCACTCGACCCACACAAAAAATCTCCCATTGATCGAAAAAGCTAGGGACAATGGagttgtaattttaagtttcCCCCCTCATTGCACCCATAGACTTCAACCGCTAGACGTGAGTATCATGGGTCCATTGAGCACATATTACACCCAAGAAGTAAACGCGTGGCTACGAAATAATCCGGGTAGAGTAGTGACACAATTCCAGCTGGCAAGACTTTTTGGAGCAGCGTACTGTAAAGCGGCTACTATACAAAACGCCGTGTCTGGCTTTACTAAAACAGGCATATTCCCAACGAACAGGACAGTATTCGGTGAAGCAGATTTTGCCGCGGCTGAGACAACGGAAATACCTTCTACAACACCATCAACTTCCGCTGATGCATATGTCAACCCGACACCATCAACTTCCGCTGATGCATATGTCAACCCGACACCGTCAACTTCTTCTGCGCCACTCGTTCACCCAATACCATCAATTTCTCCGCTGCTCATTGATCCGAGGCCATTAACTAATACTGCACCACCAGTTCCTACTACGTTGAATCTGAACCGTGTAACGGTTTCTCCAGCGGATATAATGCCAGTTCCTAAAATAAGCGTGGACCGAAAAAGACCAACCGATCACCGAAGAGGAAAAACTGCTGTTATCACTTCTTCCCCCTATAAAAATGAGTTGATAACCATCTCACAAAATAAAACTCCAAAGCTGAATTTGAATCAACCGCCTAAGAccaaaaaaccaaaacaaaaaataataaatgaaaacatttgcttgtactgccttgaagaatacggttcaagccGCGTGGATGAAGGTTGGGTGCAATGTAGGGAGTGTAAAGGTTGGGCTCATGAAGGCTGTACAGGTTATGACCCAGAGGATTTAGATAATTTTGCATGTATGGGATGCGTTGCTTCTAGATAA
- Protein Sequence
- MPRNYKRTTSRQEWDPDSMKKAVQAVFDGTMGYLKAAKTFEVPKSTLQDRVNRFRQNNDLDSSTRKGLGRFKPIFSTSQEQSLVEHVLIMEKRLFGLTYKDLRRLAYQLAEANSIDHCFNKVYKLAGEDWLAGFMKRHPQLSLRAAEPTSVARAMGFNMVSVNKFFDLLEEVIDQYKFLPTNIYNVDETGLTTVPKRQSRIIALKGRKQVGLASSAERGQLTTAVLCVSASGNYVPPLLIFPRVRMKAELLDGAPPGTVSVCHPSGWIQSDIFVEWLNHFISSVKPKKEDPVLLLLDGHSTHTKNLPLIEKARDNGVVILSFPPHCTHRLQPLDVSIMGPLSTYYTQEVNAWLRNNPGRVVTQFQLARLFGAAYCKAATIQNAVSGFTKTGIFPTNRTVFGEADFAAAETTEIPSTTPSTSADAYVNPTPSTSADAYVNPTPSTSSAPLVHPIPSISPLLIDPRPLTNTAPPVPTTLNLNRVTVSPADIMPVPKISVDRKRPTDHRRGKTAVITSSPYKNELITISQNKTPKLNLNQPPKTKKPKQKIINENICLYCLEEYGSSRVDEGWVQCRECKGWAHEGCTGYDPEDLDNFACMGCVASR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00123285;
- 90% Identity
- iTF_00784328; iTF_00784327; iTF_00122289; iTF_01440931; iTF_00036558; iTF_00036560; iTF_00036562; iTF_01440921; iTF_01440922; iTF_00042551; iTF_00042550; iTF_01532953;
- 80% Identity
- -