Alit011421.1
Basic Information
- Insect
- Agrochola litura
- Gene Symbol
- -
- Assembly
- GCA_949152395.1
- Location
- OX424496.1:2473101-2474840[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-12 1.3e-09 39.1 0.0 1 38 15 53 15 57 0.93
Sequence Information
- Coding Sequence
- ATGCCGCGTAATTATAAAAGGACTACTTCTAGACAAGAATGGGATCCGGATAACATGAAAAAAGCCGTTCAAGCCGTATTTGATGGCACCATGGGTTACTTGAAAGCGGCCAAAACTTTTGAGGTACCAAAATCAACATTACAAGATCGAGTAAACCGATTTAAACAGAACAATGATCTGGACGTTTCCACACGCAAAGGCTTGGGACGATTTAAGCCCATTTTTTCGACTTCCCAAGAACAAAGTCTAGTTGAACATGTCTTGATCATGGAAAAACGATTATTTGGTCTCACGTATAAAGATCTTCGACGCTTAGCGTATCAGTTCGCAGAAGCAAACCGTATTAACCATTGTTTCAATAAGGTTTATAAACTAGCGGGAGAAGATTGGTTAGCTGGGTTCATGAAGCGACACCCACAATTATCACTGCGTGCTGCCGAGCCAACGTCGGTGGCGAGAGCGATGGGATTTAACATGGTCAGTGTCAACAAATTTTTTGATTTGCTAGAAGGAGTTATAGATCAATATAAATTTCTGCCtacacacatttacaatgtGGATGAAACGGGCCTGACAACGGTACCAAAAAGACAAAGCAGAATAATTGCTTTAAAAGGAAGAAAACAGGTCGGTCTGGCTAGTTCAGCGGAAAGAGGCCAGCTGACTACTGCTGTCCTGTGTGTGTCTGCTTCTGGAAATTATATTCCTCCCCTGCTAATATTTCCACGAGTTCGGATGAAGGCTGAACTTCTAGATGGTGCTCCACCAGGGACAGTTTCGGTTTGCCATCCAAGTGGCTGGATACAAAGTGATATTTTTGTTGAGTGGTTGAATCACTTCATATCATCAGTAAAGCCCAAAAAAGAAGATCCTGTCCTTCTTTTACTCGATGGACACTCTACCCACACAAAAAATCTCCCACTGATCGAAAAAGCTAGGGATAATGgagttataattttaagtttccCCCCTCATTGCACCCACAGACTTCAACCGCTAGACGTGAGTATCATGGGTCCATTGAGCACATATTACACCCAAGAAGTAAACGCGTGGCTACGGCATAATCCGGGTAGAGTAGTGACACAATTCCAGCTGGCAAGACTTTTTGGAGCAGCATACTGTAAAGCGGCTACTATACAGAACGCCGTGTCTGGCTTTACTAAAACAGGCATATTCCCAACGAACAGGACAGTATTCGGTGAAGCAGATTTTGCCGCTGCTGAAACAACGGAAATACCTTCTACGACACCATCAACTTCCGCTGATGCATATGTCAACCCGACACCGTCAACTTCTTCTGCGCCACTCGTTCACTCAATATCATCAATTTCTCCGCTACCGCCGCCAGTTCCTACTACGTTGAATCTGACAGTATCTCCGGCGGATATAATGCCAATTCCTAAAATAAGTGTGGACCGAAAAAGAGCAAGCGATCACCGAAGAGGAAAAACTGCTGTTATCACTTCCTCCCCCTATAAAAATGAGTTGATAACCATCTCACAAAATAAAACTCCTAAGCTTAATTTGAATCAACCACCTAAGaccaaaaaaccaaaacaaaaaataataaatgataacaTTTGCTTGTACTGCCTCGAAGAATACGGTTCAAGCCGCGTGGATGAAGGTTGGGTGCAATGTACGGAGTGTAAAGGTTGGGCTCATGAAGGCTGTACAGGTTATGACTCAGAGGATTTAGATAATTTTGTATGTATGGGATGCGTTGCTTCTAGATAA
- Protein Sequence
- MPRNYKRTTSRQEWDPDNMKKAVQAVFDGTMGYLKAAKTFEVPKSTLQDRVNRFKQNNDLDVSTRKGLGRFKPIFSTSQEQSLVEHVLIMEKRLFGLTYKDLRRLAYQFAEANRINHCFNKVYKLAGEDWLAGFMKRHPQLSLRAAEPTSVARAMGFNMVSVNKFFDLLEGVIDQYKFLPTHIYNVDETGLTTVPKRQSRIIALKGRKQVGLASSAERGQLTTAVLCVSASGNYIPPLLIFPRVRMKAELLDGAPPGTVSVCHPSGWIQSDIFVEWLNHFISSVKPKKEDPVLLLLDGHSTHTKNLPLIEKARDNGVIILSFPPHCTHRLQPLDVSIMGPLSTYYTQEVNAWLRHNPGRVVTQFQLARLFGAAYCKAATIQNAVSGFTKTGIFPTNRTVFGEADFAAAETTEIPSTTPSTSADAYVNPTPSTSSAPLVHSISSISPLPPPVPTTLNLTVSPADIMPIPKISVDRKRASDHRRGKTAVITSSPYKNELITISQNKTPKLNLNQPPKTKKPKQKIINDNICLYCLEEYGSSRVDEGWVQCTECKGWAHEGCTGYDSEDLDNFVCMGCVASR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01440931;
- 90% Identity
- iTF_00302026;
- 80% Identity
- -