Crja004983.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cephus rjabovi
Gene Symbol
-
Assembly
GCA_030264185.1
Location
JASCRG010000417.1:183836-186224[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 5.7e-05 0.0047 17.6 1.9 1 23 291 313 291 313 0.97
2 12 0.00084 0.069 14.0 4.6 1 23 317 339 317 339 0.98
3 12 0.0018 0.14 12.9 5.4 1 23 344 366 344 366 0.96
4 12 0.0003 0.024 15.4 3.5 1 23 418 440 418 440 0.98
5 12 0.00094 0.076 13.8 1.4 1 23 445 467 445 467 0.97
6 12 6e-05 0.0049 17.6 3.6 1 23 516 538 516 538 0.99
7 12 0.0003 0.024 15.4 1.8 2 23 546 567 545 567 0.97
8 12 1.2e-06 9.5e-05 22.9 2.1 1 23 578 600 578 600 0.96
9 12 0.00027 0.022 15.5 1.6 1 23 606 628 606 628 0.97
10 12 0.00019 0.015 16.0 0.7 1 23 634 656 634 656 0.98
11 12 5.6e-06 0.00046 20.8 2.0 1 23 662 684 662 684 0.96
12 12 0.0001 0.0082 16.9 0.3 1 22 690 711 690 711 0.96

Sequence Information

Coding Sequence
ATGACGATGAATGCAAGCTACTTTGGCCTCCCACTTAACATGGACAGAGTATGTCGGGTGTGTCTCTCGGAAGGTACAAATTTGTCACCCATATTCTGTGCTGACCAAGATGTGGACGATTTTTCTGGTCTTTCCCAAAAGATTCAAGTTTGCGGGTCCATCGACATCAATGAACAGGATGGATTACCATCATTGATCTGTGATGTATGCATCTATAAGGCTAGTGTTGCTCATGAATTTCGTCAGCAATGTCAACACTCTGATACACGTCTCAGGTTGTATTACAATAAACCTGCCAGATGCAATATAATGGATTCAAGCACGCAAACGGAGCCGCAAACTCGTATAATGTTAACAAAGAAAACTAGCAGTCCacaatcaaattattttacaaaacaagGAATGCAGTCTACAGATTCTCAAGAATTTTCCAATTCGACCGAATGTTATACTCATGCACAGCAAGCCATAAGTGAAAATGATATCGATATCCAGGACGAGAAACTCTTCTTATGCAACATCGGTTTTGAGGCGTCAAAGGCAAATGAAAAGGAGTCTATGTTAACAGCAGAAAGTGTCTCGGAGACTACGTGCTCTCAgcaagaaatagaaataccaAATGACCCAATAAGTACTGACGAAAAATTGGAGATAAAGGAAGACGAACCAAAAAATCTTGAAGCAATGGAGGAAGAGTATCTTGACGAACGATTATTGAATGAAAACGTAGAAGAGGATAACAAGCCTCAACCAAAACGAACGTCATCTCGGAAGACAAAATCTATACCAAGCAAAACGTACAGCGAGGATGAAGTAGAGGATGACTATTACGATCCCAGTAGTGACAGTCAAGACTCAGAGGAACTAAAATTCAAGTGCAAGGTTTGTTCTAAACGTTATGCAACTCAGAAAGGTCTTAAGAAGCATTCCCTCGTCCACGACAAAAAACACAAATGTAATATCTGCTTCAAAATGTTCTACAAGCTAGAAAACATGGAGAAACATAAGAAGGTACACGCCTCCAAGCCACATGCATGCCAACTGTGTCATGCGTGTTTCTCCAAACCCCAGAGCCTGGTGCGACATTTAAAGTCACATACGGAGAAAGTGAATGACATCATCAAGCAAATTCGCACGGAAGATTCAGCGGACGATAGACCACCTAAAAAGGAACTAAAGAGCGAAGAGGATACCGATGACGAAACAGGTGTTACAAACGAACctgatgaatttgaaaatgccCCTGAGTTGTACAAATGCGAAATATGTAGTCAGTACTGTTCTTCCCTAAAGAATCTTAAAAGACATACGCTGGTGCACGGCGACAAGAAATATTCTTGTACTGTGTGTAAGAAATGGTTCTTCAGGCCAGACACCCTAAAGAAGCATGCAGAGAAGCATGGCCATGGACTCCTGGACAACTTAGTGGACGACAATAAGCTCTTTGACTCGGATGACGATTCATTTCCAAATTCAACAGGAAACATAGAGTCCAGTCACGAGCATgtgaagaaggaagagagtgaGGAAGAGGGCACTGGCGAATACAAGTGTCAGCATTGTGATAAGGTAATGACTACGAAAAAGGGTTTGCGACGTCATGTTTCCACACATAAACTAAAAGCAGAACCTGTGACTTGTGAAATATGTAAGAAAGTCTGTGCCAGTAGAGCACGTTTAACTCTGCACCAGAAGACGCATAATAAGCCTAAGGAAAAGGTTCCGAGAGAATATCTTTGTCATATTTGCAGTAAAGTGTATCCTAGCAACTCGTCTTTGACTTATCACATGAGAACACATACGGGGGTTAAGCCACATGTTTGTAAAACGTGTAACAGCGGTTTCACAACCACTACCAGCTTAGCAAATCACATCCGTATTCATACAGGAGATAAACCTTTTGTGTGCCATGTCTGCAGTGCAGCATTCGCTGTGAGTTCAGCGTTCCGCCGACATCTGACAAGACACACGGGGGAAGCCAATTATTTGTGTAAGACCTGCGGCAAGGCCTTTAAGAGACTTAGCACCCTTAAGGAACACACCTATACTCATTCCGGTGAAAAGCCGTATGTTTGTAAAACTTGTGGTGCAGCGTACAGTCACAGTGGTAGCTTGTTCGCGCATCAGAAACGCTGTCGTGCACAATATGGCGAGATGGTAGTTGAGGATCACCATCATGCAGTTGCACATCATATTCATGTGAATAATGTGCAGTCAGCTGTACGATCACTGGCTGTGATAGGTCAGATGTTCTAA
Protein Sequence
MTMNASYFGLPLNMDRVCRVCLSEGTNLSPIFCADQDVDDFSGLSQKIQVCGSIDINEQDGLPSLICDVCIYKASVAHEFRQQCQHSDTRLRLYYNKPARCNIMDSSTQTEPQTRIMLTKKTSSPQSNYFTKQGMQSTDSQEFSNSTECYTHAQQAISENDIDIQDEKLFLCNIGFEASKANEKESMLTAESVSETTCSQQEIEIPNDPISTDEKLEIKEDEPKNLEAMEEEYLDERLLNENVEEDNKPQPKRTSSRKTKSIPSKTYSEDEVEDDYYDPSSDSQDSEELKFKCKVCSKRYATQKGLKKHSLVHDKKHKCNICFKMFYKLENMEKHKKVHASKPHACQLCHACFSKPQSLVRHLKSHTEKVNDIIKQIRTEDSADDRPPKKELKSEEDTDDETGVTNEPDEFENAPELYKCEICSQYCSSLKNLKRHTLVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLFDSDDDSFPNSTGNIESSHEHVKKEESEEEGTGEYKCQHCDKVMTTKKGLRRHVSTHKLKAEPVTCEICKKVCASRARLTLHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMVVEDHHHAVAHHIHVNNVQSAVRSLAVIGQMF