Basic Information

Insect: Trachelus tabidus
Gene Symbol: -
Assembly: GCA_030142655.1
Location: JARQTI010000411.1:186540-188927[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5.8e-05 0.005 17.6 1.9 1 23 291 313 291 313 0.97

2 12 0.00011 0.0096 16.7 4.4 1 23 317 339 317 339 0.98

3 12 0.0018 0.15 12.9 5.4 1 23 344 366 344 366 0.96

4 12 0.0003 0.026 15.4 3.5 1 23 418 440 418 440 0.98

5 12 0.00095 0.081 13.8 1.4 1 23 445 467 445 467 0.97

6 12 6.1e-05 0.0052 17.6 3.6 1 23 516 538 516 538 0.99

7 12 0.0003 0.026 15.4 1.8 2 23 546 567 545 567 0.97

8 12 1.2e-06 0.0001 22.9 2.1 1 23 578 600 578 600 0.96

9 12 0.00027 0.023 15.5 1.6 1 23 606 628 606 628 0.97

10 12 0.00019 0.016 16.0 0.7 1 23 634 656 634 656 0.98

11 12 5.7e-06 0.00049 20.8 2.0 1 23 662 684 662 684 0.96

12 12 0.0001 0.0087 16.9 0.3 1 22 690 711 690 711 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5.8e-05	0.005	17.6	1.9	1	23	291	313	291	313	0.97
2	12	0.00011	0.0096	16.7	4.4	1	23	317	339	317	339	0.98
3	12	0.0018	0.15	12.9	5.4	1	23	344	366	344	366	0.96
4	12	0.0003	0.026	15.4	3.5	1	23	418	440	418	440	0.98
5	12	0.00095	0.081	13.8	1.4	1	23	445	467	445	467	0.97
6	12	6.1e-05	0.0052	17.6	3.6	1	23	516	538	516	538	0.99
7	12	0.0003	0.026	15.4	1.8	2	23	546	567	545	567	0.97
8	12	1.2e-06	0.0001	22.9	2.1	1	23	578	600	578	600	0.96
9	12	0.00027	0.023	15.5	1.6	1	23	606	628	606	628	0.97
10	12	0.00019	0.016	16.0	0.7	1	23	634	656	634	656	0.98
11	12	5.7e-06	0.00049	20.8	2.0	1	23	662	684	662	684	0.96
12	12	0.0001	0.0087	16.9	0.3	1	22	690	711	690	711	0.96

Sequence Information

Coding Sequence: atgACGATGAATGCAAGCTACTTTGGCCTCCCACTTAACATGGACAGAGTATGTCGGGTGTGTCTCTCGGAAGGTACAAATTTGTCACCCATATTCTGTGCTGACCAAGATGTGGACGATTTTTCTGGTCTTTCCCAAAAGATTCAAGTTTGCGGGTCCATCGACATCAATGAACAGGATGGATTACCATCATTGATCTGTGATGTATGCATCTATAAAGCTAGTGTTGCTCATGAATTTCGTCAGCAATGTCAACACTCTGATACACGTCTCAGGTTGTATTACAATAAACCTGCCAGATGCAATATAATGGATTCAAGCACGCAAACGGAGCCGCAAACTCGTATAATGTTAACAAAGAAAACTAGCAGTCCACaatcaaattatttcacaAAACAAGAAATGCAGTCTGCAGATTCTCAAGAATTTTCCAATTCGACCGAATCCTATACTCATGCACAGCAAGACATAAGTGAAACTGATATCGATATCCAAGACGAGAAACTCTTCTTATGCAACATCGGTTTTGAGGCGTCAAAGACAAATGAAAAGGAGTCTATGTTAACCGCAGAAAGTGTATCGGAGACCACGTGCTCTCAgcaagaaatagaaataccaAATGACCCAATAAGTACTGACGACAAATTGGAGATAAAGGAAGACGAACCAAAAAATCCAGAAACAATGGAGGAAGAGTATCTTGACGAACGATTATTGAATGAAAACGTAGAAGAGGATAACAAGCCTCAACCAAAACGAACGTCGTCTCGGAAGACAAAATCTATACCAAGCAAAGCGTACAGCGAGGATGAAGTAGAGGATGACTATTACGATCCCAGTAGTGACAGTCAAGACTCAGAGGAACTAAAATTCAAGTGTAAGGTTTGTTCTAAACGTTATGCAACTCAGAAAGGTCTCAAGAAGCATTCCCTCGTCCACGATAAAAAACACAAATGTAATATCTGCTTCAAAATGTTCTACAAGCTAGAAAACCTGGAGAAACATAAGAAGGTACACGCCTCCAAGCCACACGCATGTCAACTGTGTCACGCGTGTTTCTCCAAACCCCAGAGCCTGGTGCGACATTTAAAGTCACATACGGAGAAAGTGAATGACATCATCAAGCAAATTCGCACGGAAGATTCAGCTGACGATAGACCACCTAAAAAGGAACTAAAGAGCGAAGAGGACACCGACGACGAAACAGGTGTCACAAACGAACCtgatgaatttgaaaatgccCCCGAGTTGTACAAATGCGAAATATGTAGTCAGTACTGTTCTTCCCTGAAGAATCTTAAAAGACACACGCTGGTGCACGGAGACAAGAAATATTCTTGTACTGTGTGTAAGAAATGGTTCTTCAGGCCAGACACACTGAAGAAGCACGCAGAGAAACATGGTCATGGACTCCTGGACAACTTAGTGGACGACAATAAGCTCTTCGACTCGGATGACGATTCGTTTCCAAATTCAACAGGGAACATAGAGTCCAGTAACGAGCACgtgaagaaggaagagagtgAGGAAGAGGGTACTGGAGAATACAAGTGTCAGCATTGTGACAAGGTAATGACTACGAAGAAGGGTTTGCGACGTCATGTTTCCACACATAAATTAAAAGCAGAACCTGTGACTTGTGAAATATGTAAGAAAGTCTGTGCCAGTAGAGCACGTTTAACTCTGCACCAGAAGACGCATAATAAGCCTAAGGAAAAGGTTCCGAGAGAATATCTTTGTCATATTTGCAGTAAAGTGTATCCTAGCAACTCGTCTTTGACTTATCACATGAGAACACATACGGGGGTTAAGCCACATGTTTGTAAAACGTGTAACAGCGGTTTCACAACCACCACCAGCTTAGCGAATCACATCCGTATTCATACAGGAGATAAACCTTTCGTGTGCCATGTCTGCAGTGCAGCATTTGCTGTCAGTTCAGCGTTCCGTCGACATCTGACACGACACACGGGGGAAGCTAATTATTTGTGTAAAACCTGTGGCAAGGCCTTTAAGAGACTTAGCACCCTTAAGGAACACACCTATACTCATTCCGGTGAAAAGCCGTATGTTTGTAAAACGTGTGGTGCAGCGTACAGTCACAGTGGTAGTTTGTTCGCGCATCAGAAACGCTGTCGTGCACAATATGGCGAGATGGTCGTTGAGGATCACCATCATGCAGTTGCGCATCATATTCATGTGAATAATGTGCAGTCAGCTGTACGATCACTGGCTGTGATAGGTCAGATGTTCTAA
Protein Sequence: MTMNASYFGLPLNMDRVCRVCLSEGTNLSPIFCADQDVDDFSGLSQKIQVCGSIDINEQDGLPSLICDVCIYKASVAHEFRQQCQHSDTRLRLYYNKPARCNIMDSSTQTEPQTRIMLTKKTSSPQSNYFTKQEMQSADSQEFSNSTESYTHAQQDISETDIDIQDEKLFLCNIGFEASKTNEKESMLTAESVSETTCSQQEIEIPNDPISTDDKLEIKEDEPKNPETMEEEYLDERLLNENVEEDNKPQPKRTSSRKTKSIPSKAYSEDEVEDDYYDPSSDSQDSEELKFKCKVCSKRYATQKGLKKHSLVHDKKHKCNICFKMFYKLENLEKHKKVHASKPHACQLCHACFSKPQSLVRHLKSHTEKVNDIIKQIRTEDSADDRPPKKELKSEEDTDDETGVTNEPDEFENAPELYKCEICSQYCSSLKNLKRHTLVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLFDSDDDSFPNSTGNIESSNEHVKKEESEEEGTGEYKCQHCDKVMTTKKGLRRHVSTHKLKAEPVTCEICKKVCASRARLTLHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMVVEDHHHAVAHHIHVNNVQSAVRSLAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00296994;
90% Identity: iTF_00254532;
80% Identity: -