Ccin000897.1
Basic Information
- Insect
- Cephus cinctus
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_000341935.1
- Location
- NW:206558-211877[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.1e-116 8.7e-112 372.5 34.6 1 300 31 334 31 334 0.97 2 3 0.0055 60 2.1 2.7 122 171 334 383 333 387 0.91 3 3 0.049 5.3e+02 -1.1 5.6 194 238 365 408 353 409 0.58
Sequence Information
- Coding Sequence
- ATGGACGAGCCAAACAACTTTGAAGACGTGTTGCTCGACACGTGTGAAGATATAAGTATTAACGAGGTTCTGGATGTCAGTGCGCAGAAAGCAGAAGCTCGTTTGGCTGCACGGAGACAGGCCAGGGCCGAGGCCAGAGAAATCCGAATGCGAGAGCTAGAACGTCAGCAGAAGGAAGCTGAGGAGAATGCCGATAGGGTTTACGATATGTGTACAGGTGAGGATCCACCCGATGTCAACAGAACCATGAGGGTAACGCCAGATCCGGTGCGAAGTTCACGCTTGTTAGTGAACACTAATAATTTCCAGTCAAGTAGACGGTCTTCCGAGGACTCTCTTGAGGATGCTGGACTCAATAGAGATCTTCGTctGGAACTTAAGGAGCTGGAGGAGAAGTTCAGAAAAGCAATGATCGCAAATGCTCAGCTAGACAATGAGAAGTCCTCCTACGCATATCAGGTTGATCTTCTGAAAGACAAGCTGGAAGAGTTGGAAGAAACAGCAGCCCAGTTACGTCGTGAATTACGAGAAAAGAATCGAGAAGCCGAGCAACTCAAGAGGGTCAGTCAACGGCTCAAGGAAGATTTCGATTCTTGTAGAGCTCAGCTACTCGAACGGGACACATTAATTGAAGAGAACGGTCTGGTCATCGTTGAGGACGAAGGTAGCGAGGACGAGGACACTGAAAATGAGAATAGTTCCAGGGGACCCAGGAGAAGAGTTCTAGTCAGCACCGAAGCTGCggaattattacaaaatgcAGGGGAAGGATCTTTAGACGTTCGACTTAGAAAATTCGCTTCGGAGAAGAAGGAATTACAGGATGAAATTCGGCACTTGAGACTCGAATTAGAGGAAGCTAGAAATAGGGTCAGGTCCGAAAGATCACCAGGTTCCGTTCTAGGCTGTTTATCAGACTCCGAGGATGTTCAACGAGAAGCCAACAAGCTTTTGGCTGATTACAAATTCAAGTTACAAAAAGCCGAGCAGGACATGTCGACATTGCAAGCGACAGTCGCGAGGCTGGAGAGTCAAGTAATACGATACAAATCGGCAGCCGAAGCCTCGGAAAAGGCTGAAGATGAGCTTAAGGTCGAGAAACGAAAACTCCAGAGAGAAGTAAGAGAGTCCCAGGGACGTGTTGAAGAATTGGAGACGGCAAACTCGCATTTACAGAGACGTCTGGATAAATTGAAGAATGCTAAATCAGCCCTGTTGAAGGAACTCTGA
- Protein Sequence
- MDEPNNFEDVLLDTCEDISINEVLDVSAQKAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTGEDPPDVNRTMRVTPDPVRSSRLLVNTNNFQSSRRSSEDSLEDAGLNRDLRLELKELEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETAAQLRRELREKNREAEQLKRVSQRLKEDFDSCRAQLLERDTLIEENGLVIVEDEGSEDEDTENENSSRGPRRRVLVSTEAAELLQNAGEGSLDVRLRKFASEKKELQDEIRHLRLELEEARNRVRSERSPGSVLGCLSDSEDVQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00633626;
- 80% Identity
- -