Chyl005713.1
Basic Information
- Insect
- Cephonodes hylas
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_030295005.1
- Location
- AP025365.1:1540781-1546827[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-80 6.9e-76 255.8 16.4 1 297 28 310 28 312 0.88 2 2 1 2.4e+04 -8.2 16.8 1 44 309 352 309 386 0.65
Sequence Information
- Coding Sequence
- ATGTCAACGCATTTTACACTTTACGCCGCCATCGGTTTTGGGGTCAAACATCTCGGTATTGTTGAGAAACTGTCAATGGATGCGGAACAGCGATTGGCTGCGCGTCGAGCTGCGCGTGCGGAGGCTCGCGAGATCCGCATGCGCGAGTTGGAACGGCAACAGCGGGAGCAAGAGGACCATGCTGACAAAGCCTACGACATGTATGCAGAGACGGTGGGGCGGCGCGCCGGCGGGCGGCTGGCGGCGCTCAACCCCGGCGCCGTGCACTCGCCGCGGCGCAGCTCCGAGGACTCCGTCGACGACAGCTTCAACGTCAAAGACCTTAGGCACGAGCTCAAAGAGGTGGAGGAGAAGTTCCGCAAAGCGATGATCCTCAACGCCCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTTGAGTTGCTCAAGGACAGGATAGAAGAGCTGCACGAGGAGTACGCGCAGCTGCAGCGCGAGCACCGCGAGAAGTGTTCGTCCCACGAGCGCCTGAAGCGGTCGCACGCGTCGCTGGAGCGCGAGGTGGAGGCGGCGCGGGGCGCAGTCCGAGCCCGGGACGCGGCGGCGCACGCGGCGGGCTTCGCGTTCGTGGACGCCGCGCCGGCCGAGCCCCCGAGCgaccccgccgcgccgccgcccccgccgctcGCGCTCGTCAGCCACGCCGCGCAGCAGCTGCTCGACGACGCCGGAGACGGCACGCTTGACGTGCGATTGCAGAAGCTGGTGAGCGCGAAGCAGGCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCAGCTGCACGAGGAGCGCGCGGCGCGGCACAACGGCGTGGCCAGCCACCACGACCACCACTACGAGACCGAGCTGGAGTCGCTGCGCAAGTGCGTGTCGGAGGCGAAGGcgcgcgcggcgcgggcggaGGCCGAGGCGGCGCTGCAGGCCGCCGCCACCGCGCGGCTCGAGGCGCAGCTGCAGAGACTGCGCGCGCGGCAGGACCACCAGGACGAGCACGAGGAACTGCTCAAGCAGGAGAGGCGCAGGCTGCAGAGAGAGGCAAGAGAAGCTCTGAACCGAGTGGAGGAGTTGGAGACAGAGAACAGTCACTTGACGAAGCGGCTGGACAAGCTGAAGAACGCAAAGTCGGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MSTHFTLYAAIGFGVKHLGIVEKLSMDAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGGRLAALNPGAVHSPRRSSEDSVDDSFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSHERLKRSHASLEREVEAARGAVRARDAAAHAAGFAFVDAAPAEPPSDPAAPPPPPLALVSHAAQQLLDDAGDGTLDVRLQKLVSAKQALESEVRKLKLQLHEERAARHNGVASHHDHHYETELESLRKCVSEAKARAARAEAEAALQAAATARLEAQLQRLRARQDHQDEHEELLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01248146;
- 90% Identity
- -
- 80% Identity
- -