Basic Information

Insect: Cenopis cana
Gene Symbol: -
Assembly: GCA_951800055.1
Location: OX637496.1:5859754-5866341[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5.9e-06 0.00045 21.6 3.9 1 23 215 237 215 237 0.97

2 15 2.8e-05 0.0021 19.5 5.5 1 23 243 265 243 265 0.97

3 15 0.004 0.31 12.7 4.4 1 23 271 293 271 293 0.98

4 15 2.1e-06 0.00016 23.1 1.8 1 23 299 321 299 321 0.99

5 15 2.8e-05 0.0022 19.5 6.6 1 23 359 381 359 381 0.97

6 15 0.0041 0.32 12.7 2.8 1 23 385 407 385 407 0.97

7 15 0.00046 0.036 15.7 2.6 1 23 413 435 413 435 0.98

8 15 3.1e-05 0.0024 19.3 2.4 1 23 441 463 441 463 0.97

9 15 1e-05 0.0008 20.8 0.2 1 23 469 491 469 491 0.97

10 15 0.0019 0.14 13.8 3.6 1 23 499 521 499 521 0.97

11 15 2.2e-07 1.7e-05 26.1 1.1 1 23 527 549 527 549 0.98

12 15 4e-06 0.0003 22.2 1.8 1 23 555 577 555 577 0.98

13 15 5.8e-06 0.00045 21.6 4.8 1 23 583 605 583 605 0.98

14 15 0.00027 0.02 16.4 0.7 1 23 611 633 611 633 0.97

15 15 8.4e-07 6.5e-05 24.3 2.8 1 23 639 662 639 662 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5.9e-06	0.00045	21.6	3.9	1	23	215	237	215	237	0.97
2	15	2.8e-05	0.0021	19.5	5.5	1	23	243	265	243	265	0.97
3	15	0.004	0.31	12.7	4.4	1	23	271	293	271	293	0.98
4	15	2.1e-06	0.00016	23.1	1.8	1	23	299	321	299	321	0.99
5	15	2.8e-05	0.0022	19.5	6.6	1	23	359	381	359	381	0.97
6	15	0.0041	0.32	12.7	2.8	1	23	385	407	385	407	0.97
7	15	0.00046	0.036	15.7	2.6	1	23	413	435	413	435	0.98
8	15	3.1e-05	0.0024	19.3	2.4	1	23	441	463	441	463	0.97
9	15	1e-05	0.0008	20.8	0.2	1	23	469	491	469	491	0.97
10	15	0.0019	0.14	13.8	3.6	1	23	499	521	499	521	0.97
11	15	2.2e-07	1.7e-05	26.1	1.1	1	23	527	549	527	549	0.98
12	15	4e-06	0.0003	22.2	1.8	1	23	555	577	555	577	0.98
13	15	5.8e-06	0.00045	21.6	4.8	1	23	583	605	583	605	0.98
14	15	0.00027	0.02	16.4	0.7	1	23	611	633	611	633	0.97
15	15	8.4e-07	6.5e-05	24.3	2.8	1	23	639	662	639	662	0.97

Sequence Information

Coding Sequence: ATGGCTTTTGTCAAAATGGACGCATTACTTTCCTGTCGCTGCTGCTTGCTGCGCCCTCCGGACAAGGGGCTCGACACGCTGTACAGCCATCAAGGCAAAACGGAAATATATTCAGACATGCTGAGAGAATGCTTCGATATACACCTAAATTCAGCCAACGGTGAGTGCGGGATCTGTGAGGTGTGTGTAAGCAGGCTGCGAGATGCAAGTGACTTCAAGCTGCAGGTGCAGCGCAGCCAGGCAGAGCTACTGTCACGGATGCAGGGAGCGGCGTGTGCCAAAGATGAGCAAGCTCAACGTAATGTTGACATCAACCACCGACTACTGCAGCTTGAGTTGGAGAAGGCTTACGGAGATGACGATGGAATGTGGATTATAACCTTGCTGCATAATTATGCCTGGCTGCCTCTTTCACATTTTCAAAGTCGGTGCAAGTGTGAAAGGCACGGCTCTTCATTTGGAGAGCCGTGGAGTGAATCTAATAAACCTCTCTTGCCCCCAGGTGAAATCAAGACGGAGAAACCAGAATGCCAAGTTGAGATAAGTGAGAAAACACCATTGGCATCATTAGGCTCATCACCGGCGCCGGCTCCGCCCGCCCCCGCCCCACAGGCCGCCCCCGCCCGCGGCATCGACGTAATCCACATCTGCGACATATGCAACAAAACATTCGACCACCAATCAGCACTCAAGCTTCACCGCCGCATGCACACAGGAGAGAAACCTTTCTCCTGCAACGTCTGCCACAAAAGGTTCTCACAAAAGGGCAACTTGACCTCTCATTTCAAATATCACATGGGCGATTATCGATACTTCTGTGATGTGTGTAATAAGAGATTTACGCAAAAGTGTATCATGGTTAAACATATGCAGACACACACAGGACAGAAACCTTATAAATGTGAAGTATGCAAGAAAAAGTTTACACTCAAAAGTTATCTAGCCGCTCATTTAAAAACGCACTTGAAGTATGAAAATAGTGACAACTCTGAAGAAAAGCCCGAATGCGACGAAGAAACAAAAGAATGTAATTTAGATGCTAACTCTAAAGATAACGCGGCGCAGAAAACGTTTCATGAATGTGAAGTTTGCCACAAAAGGTTTGCTCAGAAATGCAACTTGACTGCTCATATGAAAAATCACGCATCCCGGTTCTTTTGCGAACAATGCCAGAAGGAATTCGCGTGTAAGTCCAGCTTGAATGCTCATTTGCTCCGTCATACGGGAAATCAGATTTTCTCGTGTGACGTATGCAATAAAAGATACAAATCCAAACGTTCTCTGGACCTCCATCGAACAACTCACACGGGAGATTATAAATATACTTGCAATGTGTGCAATAAACAATTTGTTCATAAAGAGACCATGACACGACACATTCTTGAACACACGGGAGAACGACCATACGCCTGCGATATATGTAATAAAACATTCCCAGTGCAGAATGCTTTAAACCGACACAAGGAAACACACGGACCAAAGGGAGAAAAACGGTTTTGCTGCGAActatgtaaaaaactattttcgACGAAAAACTCTCTAGCCACACATTTGGACAGACATATGGGTAAAAAACCCTACATGTGTGAAATTTGCAGCAAAACGTTTACAGACAAAAGCAATTTAAAAGTGCATAAAGCGACACATTCCTCAGAGAAATTGTACTCCTGCGAAATATGTCATAAGCGCTTCCGGCAAAGCAGAGGTTTACAGGGCCACATGATGATTCACGAGGGAATCAAACAACACACCTGCGAAGTATGCAGTAAGCAATTTAGACATAAATCCGCTTTGATGGTGCATATGCGACGACACACAGGACAAAAACCGCATTCTTGTGATATCTGCAAAAGGGAGTTTATAGTTCTAGCGGAATTAAGGGTGCATTACCGCAGTCATACTGGGGAAAAGCCGTTTGTTTGTGGAATTTGTGATAAGAAATTTGCACGCTCTAGTCATTACAGGAGACATCTTAAACGCGTTCACAACGAAAAACCCTCGAAATATACGGTCCTGTAA
Protein Sequence: MAFVKMDALLSCRCCLLRPPDKGLDTLYSHQGKTEIYSDMLRECFDIHLNSANGECGICEVCVSRLRDASDFKLQVQRSQAELLSRMQGAACAKDEQAQRNVDINHRLLQLELEKAYGDDDGMWIITLLHNYAWLPLSHFQSRCKCERHGSSFGEPWSESNKPLLPPGEIKTEKPECQVEISEKTPLASLGSSPAPAPPAPAPQAAPARGIDVIHICDICNKTFDHQSALKLHRRMHTGEKPFSCNVCHKRFSQKGNLTSHFKYHMGDYRYFCDVCNKRFTQKCIMVKHMQTHTGQKPYKCEVCKKKFTLKSYLAAHLKTHLKYENSDNSEEKPECDEETKECNLDANSKDNAAQKTFHECEVCHKRFAQKCNLTAHMKNHASRFFCEQCQKEFACKSSLNAHLLRHTGNQIFSCDVCNKRYKSKRSLDLHRTTHTGDYKYTCNVCNKQFVHKETMTRHILEHTGERPYACDICNKTFPVQNALNRHKETHGPKGEKRFCCELCKKLFSTKNSLATHLDRHMGKKPYMCEICSKTFTDKSNLKVHKATHSSEKLYSCEICHKRFRQSRGLQGHMMIHEGIKQHTCEVCSKQFRHKSALMVHMRRHTGQKPHSCDICKREFIVLAELRVHYRSHTGEKPFVCGICDKKFARSSHYRRHLKRVHNEKPSKYTVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654505; iTF_01072777; iTF_00658651; iTF_00656352;
90% Identity: -
80% Identity: -