Basic Information

Insect: Notocelia uddmanniana
Gene Symbol: -
Assembly: GCA_905163555.1
Location: LR991076.1:6956071-6968397[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.1e-06 0.00047 22.1 4.7 1 23 169 191 169 191 0.98

2 15 2.5e-05 0.0028 19.6 5.5 1 23 197 219 197 219 0.97

3 15 0.015 1.7 10.8 7.1 1 23 225 247 225 247 0.98

4 15 1.3e-06 0.00015 23.6 1.2 1 23 253 275 253 275 0.99

5 15 2.5e-05 0.0029 19.6 6.6 1 23 315 337 315 337 0.97

6 15 0.0061 0.7 12.1 2.8 1 23 341 363 341 363 0.97

7 15 0.00041 0.047 15.8 2.6 1 23 369 391 369 391 0.98

8 15 2.8e-05 0.0032 19.4 2.4 1 23 397 419 397 419 0.97

9 15 1e-05 0.0011 20.8 0.2 1 23 425 447 425 447 0.98

10 15 0.0016 0.19 13.9 3.6 1 23 455 477 455 477 0.97

11 15 2e-07 2.2e-05 26.2 1.1 1 23 483 505 483 505 0.98

12 15 3.7e-06 0.00043 22.2 1.8 1 23 511 533 511 533 0.98

13 15 2.9e-06 0.00033 22.5 4.8 1 23 539 561 539 561 0.98

14 15 0.00024 0.027 16.5 0.7 1 23 567 589 567 589 0.97

15 15 2.8e-06 0.00032 22.6 3.3 1 23 595 618 595 618 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.1e-06	0.00047	22.1	4.7	1	23	169	191	169	191	0.98
2	15	2.5e-05	0.0028	19.6	5.5	1	23	197	219	197	219	0.97
3	15	0.015	1.7	10.8	7.1	1	23	225	247	225	247	0.98
4	15	1.3e-06	0.00015	23.6	1.2	1	23	253	275	253	275	0.99
5	15	2.5e-05	0.0029	19.6	6.6	1	23	315	337	315	337	0.97
6	15	0.0061	0.7	12.1	2.8	1	23	341	363	341	363	0.97
7	15	0.00041	0.047	15.8	2.6	1	23	369	391	369	391	0.98
8	15	2.8e-05	0.0032	19.4	2.4	1	23	397	419	397	419	0.97
9	15	1e-05	0.0011	20.8	0.2	1	23	425	447	425	447	0.98
10	15	0.0016	0.19	13.9	3.6	1	23	455	477	455	477	0.97
11	15	2e-07	2.2e-05	26.2	1.1	1	23	483	505	483	505	0.98
12	15	3.7e-06	0.00043	22.2	1.8	1	23	511	533	511	533	0.98
13	15	2.9e-06	0.00033	22.5	4.8	1	23	539	561	539	561	0.98
14	15	0.00024	0.027	16.5	0.7	1	23	567	589	567	589	0.97
15	15	2.8e-06	0.00032	22.6	3.3	1	23	595	618	595	618	0.97

Sequence Information

Coding Sequence: ATGGACGCGCTACTTTCCTGCCGCTGCTGCCTACTGCGCCCTCCGGATAAGGGTCTCGACACGCTGTACAGTCATCTCGGCAAAACGGAGATATATTCAGACATGCTGCGGGAATGCTTCGATATACATCTTAATTCAGCCAATGGCGAGTGTGGGATCTGCGAGGTGTGCGTGGGCCGGCTGCGGGACGCGAGCGACTTCAAGCTGCAGGTGCAGCGCAGCCAGGCGGAGCTGCTGTCACGGATGCAAGAAACTGAGAGTGCCAAAAATGAGCAAATTCAGCGAAATGTTGATATCAACCACCGACTGCTACAACTTGAGTTGGAGAAAGCTTATGGAGATGAGGCTGAAATGtGTGAAGTCAAGATGGAGAAGACAGAATGCCAAGTTGAAATAAGTGAGAAAACACCGAtgacgtcattaggcGCATCGCCGGCACCGGCTACACCCTCCCCCGCCCCGCCTCAACCCGCCCCCGCTCCGGCCCGCGGCATCAACGTAATCCACACCTGCGATATATGCAACAAAACATTCGACCACCAATCAGCGCTCAAACTTCATCGCCGCATGCACACAGGTGAAAAACCGTTTTCCTGCAACGTTTGTCACAAAAGATTCTCACAAAAGGGCAACTTGACCTCCCATTTCAAATATCACATGGGCGATTATCGATACTTCTGCGATGTATGCCACAAGAGATTTACGCAGAAGTGTATCATGGTGAAACATATGAAAACACACACTGGAGATAAACCTTACACTTGTGAAGTATGTAATAAGAAGTTCACGCTAAAAAGTTATCTAGCCGCTCATTTAAAAACGCATTTAAAGTATGAAAATAGTGATAATGATTCTGATGAAAAGTCCGAATGCGACGAGAAAATTGCAAAAGAATCTAATTTAGATGCTAAATCTAAAGATAACGCAGCTGAAAAACCGTTCCATGAATGTGAAGTTTGCCACAAAAGGTTTGCTCAGAAATGCAACTTAACCGCTCATATGAAAAATCACGCATCGAGGTTCTTTTGCGAACAATGCCAAAAAGATTTCGCTTGTAAGTCCAGCTTGAATGCTCATTTGCTCCGTCACACGGGAAACCAAATTTTCTCGTGTGATGTATGCAATAAACGATATAAATCGAAACGTTCTTTAGACCTACATCGAACTACTCACACGGGAGACTATAAATATACGTGCAATGTGTGCAACAAACAATTCGTACATAAAGAGACAATGACGCGACATATCCTTGAACACACAGGTGAAAAACCTTACTCCTGTGACATATGCAACAAAGCGTTTCCAGTGCAGAATGCTTTAAACCGACATAAGGAAACACATGGACCAAAGGGAGAAAAGCGATTTTGCTGCGAACTTTGTAAGAAACTCTTTTCAACTAAAAACTCTCTAGCCACGCATTTGGACAGACATATGGGGAAAAAACCATACATGTGCGAAATATGCAGCAAAACGTTCACAGACAAAAGCAATCTAAAAGTTCATAAAGCAACACACTCCTCGGAGAAATCGTACTCTTGTGAAATATGTCATAAGCGATTCCGGCAGAACAGAGGTTTACAGGGCCACATGATGATTCACGAGGGAATCAAACAGCACACCTGCGAAATATGCAGTAAGCAATTCAGACACAAGTCCGCTTTAATGGTTCATATGCGACGGCACACGGGACAGAAACCCCATTCTTGTGACATTTGTAAAAGAGAGTTTATAGTTCTAGCGGAATTGAGAGTACATTATCGTAGTCATACTGGAGAGAAACCGTTTGTTTGTGGAATTTGCCAAAAGAAATTTGCACGATCTAGTCATTACAGGAGACATCTTAAACGCGTTCACAACGAGAAACCTGCGAAATATACTGTACTGTAA
Protein Sequence: MDALLSCRCCLLRPPDKGLDTLYSHLGKTEIYSDMLRECFDIHLNSANGECGICEVCVGRLRDASDFKLQVQRSQAELLSRMQETESAKNEQIQRNVDINHRLLQLELEKAYGDEAEMCEVKMEKTECQVEISEKTPMTSLGASPAPATPSPAPPQPAPAPARGINVIHTCDICNKTFDHQSALKLHRRMHTGEKPFSCNVCHKRFSQKGNLTSHFKYHMGDYRYFCDVCHKRFTQKCIMVKHMKTHTGDKPYTCEVCNKKFTLKSYLAAHLKTHLKYENSDNDSDEKSECDEKIAKESNLDAKSKDNAAEKPFHECEVCHKRFAQKCNLTAHMKNHASRFFCEQCQKDFACKSSLNAHLLRHTGNQIFSCDVCNKRYKSKRSLDLHRTTHTGDYKYTCNVCNKQFVHKETMTRHILEHTGEKPYSCDICNKAFPVQNALNRHKETHGPKGEKRFCCELCKKLFSTKNSLATHLDRHMGKKPYMCEICSKTFTDKSNLKVHKATHSSEKSYSCEICHKRFRQNRGLQGHMMIHEGIKQHTCEICSKQFRHKSALMVHMRRHTGQKPHSCDICKREFIVLAELRVHYRSHTGEKPFVCGICQKKFARSSHYRRHLKRVHNEKPAKYTVL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289867;
90% Identity: iTF_00654505;
80% Identity: -