Basic Information

Gene Symbol
nfxl1
Assembly
GCA_905187575.1
Location
LR994577.1:19293324-19296311[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1 2.9e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 18 0.0052 1.5e+02 3.2 0.3 4 10 169 175 168 176 0.97
3 18 1.6e-07 0.0044 17.6 15.9 3 19 186 202 185 202 0.95
4 18 3.6e-09 0.0001 22.9 12.6 1 18 237 254 237 255 0.93
5 18 2.5e-09 7.2e-05 23.4 10.9 1 19 290 308 290 308 0.99
6 18 5.8e-05 1.7 9.4 17.1 3 19 345 361 337 361 0.84
7 18 0.62 1.8e+04 -3.4 0.4 7 11 365 369 365 369 0.84
8 18 1 2.9e+04 -5.3 2.2 5 10 384 389 384 389 0.88
9 18 2.2e-05 0.61 10.8 20.0 1 18 395 412 395 413 0.97
10 18 9.8e-11 2.8e-06 27.9 14.2 1 19 422 440 422 440 0.99
11 18 0.00014 3.9 8.2 6.3 10 19 489 498 486 498 0.92
12 18 0.0001 2.9 8.7 6.8 1 12 508 518 508 518 0.96
13 18 0.16 4.4e+03 -1.5 3.5 14 18 547 551 547 552 0.87
14 18 2.9e-06 0.083 13.6 6.5 1 11 588 598 588 599 0.98
15 18 0.32 9.1e+03 -2.5 0.9 15 18 613 616 612 617 0.85
16 18 0.49 1.4e+04 -3.1 2.2 3 8 629 634 628 635 0.74
17 18 2.6e-06 0.073 13.7 10.7 1 16 687 701 687 707 0.86
18 18 0.33 9.5e+03 -2.6 1.5 5 10 736 741 736 741 0.94

Sequence Information

Coding Sequence
ATGGCTCGAAGATATCGTGACGCCGCTGCTAAATTGCAGCAGAGCGTCCAAAAACATTTAAAAGTTACTAAAGATTTATCGTCTTCCGAAGACGATGAACCATTTGAGCCTAATGTCTTGGAAGGAATGTTTCAAAATTATTGCAAGGGTGGAGGAGATAACCTTATGTTGAATCGTACCAAAATACTTCTAGAAGAAGCTTCAAGTGGAAAATCTATAACTTGCTTGATATGTATTGGATCTATAAAACGATCAGACGCGATTTGGACTTGTAATCACTGTTTCGCTTATTTCCATCTATCTTGTATTCAAAAGTGGGGTAATGATAGTGTCAGTTTAAGAAGTGAAGAAGTTCAGGCTCCAATTTCTGTATATAAGCAAAAAAAGATAGAATGGTGTTGCCCGAAGTGCAGATATTCATATACTAAAGAAGAAATACCCCGCAAGTACCGTTGTTTTTGTGGCAGAACTGATGACCCCCAGTATCACCCATGGTTGTTGCCTCACACCTGTGGTGAAGTGTGTGGTAAGAGTCTTTCATTAACAAATAATTGTAAACACAAGTGCCTTTTGTTGTGTCACCCGGGGCCGTGCCCCCCTTGCCCTCAGACTGTAAATGGACTATGTTTTTGCGAAAAAGAAAATAAAAGAGTAAGATGCAGCACTTCCAAATGGTCCTGCGGCAGTCAGTGTAAGAAAATGCTACAATGCAATTCACACAGATGTGAAAATATCTGTCATGAAGGTGATTGCCCTCCATGTAATTACACAAGTGAGCAGTTCTGCCAATGTGGTTCTGAGAAGGAAAAAAGGCCTTGTGATAACTTGGTCTGGCACTGTAAAAAGAAATGTGGAAGACAATTTTCATGTGGTTATCATAAATGTGAAAGAATTTGCCACTTTGGTCAGTGTGGAAACTGTCCCAATTCAGGTGTAATGGCATGTCCATGTGGAGCTAATGAGCGGTACATAGAGTGTCCAGATACAATTGAAACATGTGTCAGCACTTGTGGAAAGAAGAAGGAAGGTTGTCAGCATAGTTGTCCAGAGAAATGTCATAAAGCTGATTGTCCACCGTGCCAAGTTTTAGTGGAAAAAAAGTGTCACTGCTCAACACATACTCGCTCATTACCATGTAGTAAAGATTTTAAATGCGAAACAAAATGCAGAGGAATAAGGCCATGTGGTAAACATGGATGTGGACGCAAGTGCTGCAGTGGAAGCTGTCCACCTTGTGAAAAAATTTGTGACAAACCTCTTCAATGTGGCCGTCACAAATGTACTTCAGTTTGTCATCGTGGGCCATGTTATCCATGTCCTTTAGATTCCAAAGTCACTTGCCGCTGTAAAGAAACCTATGTGACAGTACCATGTGGTAGAGAAAGACACACCAAACCTCCCAAATGCAGCCTTTTGTGCAAATTGAAATATAAGTGTGGACACATTGAGGAAAACAAACATAATTGCCATTTTGGTGATTGTCCTCCTTGCAAAGCAATTTGTGATAAAGTTTATGATAAATGTGGTCATAATTGCAAAGCAGTATGTCATGAATATGTTTTAGCCACATTTAAACAGATTGAAAAACCTGCAACACCCTGGGAAGCACAACCTCCAAAGACAAAGATTGTGAAACTGGATTGTCCACCATGTGAAATGCCCGTGCCAGTGATATGTTTCGGTGAACATGAAGCTGATAATCAAGCATGTCATTTGGCCATAAGAAGACCTTGTGGCCGGGAATGTGGAAAACCATTAGAATGTGGAAATCATAACTGCACACAGTTGTGTCATTTATATCAAAATGATCCTGATTATCCAAATGTGCCTTATTTATGCAAACCTTGCAATAAAGAGTGCCTAGTCAACCGTCCAGAAAAGTGTACACACAAATGCCCCAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATTGCGGTGTAACAGAGATTTATTTACGGTGTTTTGAGCTATTGACTGTAACTGAAGATATGCTCAGTTGTAAACAACAATGCCCAAAAAATATTGAATGTGGTCATAGATGTAAAAATCTATGCCACAATGGAATATGTGGACAATATCAAGAATGTACCAAAAAAACTAAGGTGCTATGCCCTTGTGGCAATTTGAAGAAAGATGCACCTTGCAATGCAGTCAGAAAATCAGAATTCAAAATTACTTGTGACCAAACCTGCGAGGACAAAAAGTTAGCAGCTTTTATTGAAAAGGAAAAGGAGGAAAAAAGATTAAGGGATTTAGAAGAAGAAAGGAATCGCAAAGAGTTAGCAGAGTATGAATGGAAACTGAGCGGAAAGAAAAAGAAGTATAAAGAGAAAAAAGTACGGGTCCAGACTGATGACAGAAATACCATACAAAAGTATTGGGTTCCTATTTTTTCTATGTTGATAACCTCAATTATAGCTGTGTACTACATATTCTATGTCTTATAA
Protein Sequence
MARRYRDAAAKLQQSVQKHLKVTKDLSSSEDDEPFEPNVLEGMFQNYCKGGGDNLMLNRTKILLEEASSGKSITCLICIGSIKRSDAIWTCNHCFAYFHLSCIQKWGNDSVSLRSEEVQAPISVYKQKKIEWCCPKCRYSYTKEEIPRKYRCFCGRTDDPQYHPWLLPHTCGEVCGKSLSLTNNCKHKCLLLCHPGPCPPCPQTVNGLCFCEKENKRVRCSTSKWSCGSQCKKMLQCNSHRCENICHEGDCPPCNYTSEQFCQCGSEKEKRPCDNLVWHCKKKCGRQFSCGYHKCERICHFGQCGNCPNSGVMACPCGANERYIECPDTIETCVSTCGKKKEGCQHSCPEKCHKADCPPCQVLVEKKCHCSTHTRSLPCSKDFKCETKCRGIRPCGKHGCGRKCCSGSCPPCEKICDKPLQCGRHKCTSVCHRGPCYPCPLDSKVTCRCKETYVTVPCGRERHTKPPKCSLLCKLKYKCGHIEENKHNCHFGDCPPCKAICDKVYDKCGHNCKAVCHEYVLATFKQIEKPATPWEAQPPKTKIVKLDCPPCEMPVPVICFGEHEADNQACHLAIRRPCGRECGKPLECGNHNCTQLCHLYQNDPDYPNVPYLCKPCNKECLVNRPEKCTHKCPKXXXXXXXXXXXXXXXXXXXYCGVTEIYLRCFELLTVTEDMLSCKQQCPKNIECGHRCKNLCHNGICGQYQECTKKTKVLCPCGNLKKDAPCNAVRKSEFKITCDQTCEDKKLAAFIEKEKEEKRLRDLEEERNRKELAEYEWKLSGKKKKYKEKKVRVQTDDRNTIQKYWVPIFSMLITSIIAVYYIFYVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00787306;
90% Identity
iTF_00745308;
80% Identity
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