Clyc021139.1
Basic Information
- Insect
- Cecropterus lyciades
- Gene Symbol
- -
- Assembly
- GCA_002930495.1
- Location
- MOOZ01009162.1:66348-69911[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.042 3.3 9.0 1.0 1 23 43 66 43 66 0.96 2 29 0.003 0.24 12.6 1.5 1 23 72 95 72 95 0.96 3 29 0.11 8.4 7.7 1.5 1 23 99 122 99 122 0.93 4 29 0.043 3.5 8.9 0.6 2 23 125 147 125 147 0.94 5 29 0.24 19 6.6 0.1 2 20 153 171 152 173 0.91 6 29 0.00084 0.067 14.3 2.5 1 23 227 250 227 250 0.97 7 29 2.8 2.2e+02 3.2 0.1 3 23 279 300 277 300 0.94 8 29 0.00045 0.036 15.2 0.2 1 23 322 345 322 345 0.92 9 29 5.5e-05 0.0044 18.0 2.3 2 23 351 372 350 373 0.94 10 29 0.87 69 4.8 4.7 1 23 378 401 378 401 0.95 11 29 0.013 1 10.6 0.5 2 23 407 429 406 429 0.94 12 29 0.0035 0.28 12.4 2.4 1 23 433 456 433 456 0.95 13 29 5 4e+02 2.4 2.1 2 23 463 484 462 484 0.94 14 29 0.019 1.5 10.1 0.2 1 23 530 552 530 552 0.95 15 29 0.037 2.9 9.1 0.3 2 23 580 602 579 602 0.91 16 29 0.087 7 8.0 0.8 2 23 623 645 622 645 0.95 17 29 0.0038 0.31 12.2 1.5 1 23 650 672 650 673 0.96 18 29 0.11 8.8 7.6 2.2 1 23 677 700 677 700 0.89 19 29 0.0011 0.09 13.9 2.7 2 23 703 725 702 725 0.97 20 29 8 6.4e+02 1.8 0.5 2 20 731 749 730 751 0.91 21 29 0.0046 0.37 12.0 2.5 1 23 804 827 804 827 0.96 22 29 8.1 6.5e+02 1.8 0.1 2 23 855 877 854 877 0.91 23 29 0.00097 0.077 14.1 0.3 1 23 899 922 899 922 0.92 24 29 5.5e-07 4.4e-05 24.3 0.3 1 23 927 950 927 950 0.97 25 29 9.9e-05 0.0079 17.2 2.3 1 23 955 978 955 978 0.94 26 29 0.0016 0.13 13.4 0.5 2 23 984 1006 983 1006 0.93 27 29 7.5e-05 0.006 17.6 2.5 1 23 1010 1033 1010 1033 0.97 28 29 0.21 16 6.8 0.3 2 23 1040 1061 1039 1061 0.96 29 29 0.045 3.6 8.9 1.5 1 23 1067 1089 1067 1089 0.96
Sequence Information
- Coding Sequence
- ATGTGTGAAATATGTGAGGAAGCTAAAGATAATTTCGATGAGTTAGTCACACATTTGATCGAAGAACACAATTTGGTGTACAACAAAGAAGTTAAGTTGGTGATAATGAAGTATCAATTGGAGAACTTCAAATGTGTACTGTGCGATCAGAAATGTAGTAGTCTCATCGCACTGTTGACTCACGTTAGCAAAGACCATCAGACGATCAAGCCGTATTCCTGCTCAGAGTGCCGGCAAAGGTTCAATAAGAAGTGGGAGTTAGATACGCATACAAGAGCCTATCACAAAAAAGAGTATAATTGTTCTAAATGCGCTCTACGGTTTACCTCGTACCTTTCGTTGCAAATTCATAAAAGCAACTCTCACATCGCAACGTGTAATATTTGCTTTAAACCGTTTGCAACGGCTAAGAAAAGGcttgaacatttaaaattagaacACGGTGATGATGATCTAACATGCGGCTTTTGTGACAAAGTAATAAGTACCAAGATTGGGTTTCTTAGACACGCTTCGAAATGCACTGAAAAGGAAGAAAAGCATTCCCCGGAGGAGTTAAAAGAACTAATTGGTGATGGAATCGCTGTAAAGAAAGCTAGCGTGAAAACTATTAGGAATAACATAGCGTGCCTTCTTAACAACTCCACAGCCGTTCCATTTAAATTCTTCATGAACAGATTCAGATGTTTCTACTGTCCGAAAGATTTCAACGAATGTGATGATTTAAAGGAGCACACAAAGATAGAGCATCCGCTTTGCGATACAACGTTCAAATGCATGAGTATGCGTAATAGGCAGGATGCGAAGATCAAAATAGATATATCTTCGCTCTTTTGCAAATTGTGTTTCGAGGCTATGAAAGATTTGGAGACACTAATTGATCACCTCATTTCTGAACATAAATCGCATTATGACAAGACTGTAGATAGTAACATTCAAACATTCTCCTTGATTAAAGATCGGTTCCTTTGTCCCTTTTGTGGTGAAGTGTTCAGGTATTTTAGCAACGTTTTGAAACATATAGGGCGAGCTCATTCTAACAATAATACTGTTTGTATGCACTGCGGCGCAACGTTTCGGAACTCACCGAATCTGAGAGCCCATATTTACAAGCACCATAAAGCTGCGAAGTACAAATGTGGAAAATGCAAACTAGAGTTTAGTTGCAAGAAGTACTTCCAAACGCACTTAGGTAGAGTCCACGGGAACAAGATGGTGGAATGCAGCACGTGTAGGGAGAGGTTTTCGTCGGTGTACGAGAAGCAACGCCACATGATAAACGTGCACCAATCCGGGCATAAATGTTCTTACTGTGGCAAACTGTTCACACGTAATTCTATAATGGTGGATCACGTGCGAAGGacgcatttaaaagaaaaaaacgttCAGTGCGAAATCTGTTGCGAGCTGTTCTTCGATGTGCATTTGCTAAGGATGCACATGGTTAAGCATTATGGTGAACGAAACTTTCATTGTGACCTCTGCGATGTAAACGGACCGGCTCAAACGCAAAGTTTTAATAGACGAAGGAATCTCCAGATTTTGTTCAACAACACTTCATTATGCCCCTTTAAGTGGCGAGGGAAATACCTATGCTTTTACTGCGGAGAGGATATACCAAATTACGAGGAGTTAAAGAAGCATACGAAAGCGCATGGCGCATGTTCTGATAGAGATAGAGCGATACGATTGGTCAAAGCAGCAGACGCTGAAGTCAAAATCGATATATCTGATGTCACTTGTGAGATTTGCAACGAATCCTTCGCTAATTTCGACGATATTGTTTACCATttgatacataaacataaattgcCCTACGACAATGACGTGAAACTTTCCTTAGCAGTGTACCGTCTTGTGGATCTGCAATGTTTATTTTGTGAAGAGAAATTCGATTATTTTAACAAACTCATTAAACACGTCAATGTTAAGCATCCGAGCGAAAGTTATGAATGCTTGGAATGTCTTCAAATATTCAATAAGAAGAGAGACTTAGATGCTCACACGCGAATGCATCACAAAAAGGATCACAGGTGTCTCAAATGTTCTTTGACGTTTGCCTCATACGCTGCCTTCAAGAAACACAACGCCAATTCTCATGTATCCACGTGCAATATATGTTTCAAGAGCTTTTCCTCCTTGAAGAAGCGGTTAAAACATATGAAGATGGAACACGCAAACGAAATGCTTAAATGCGGTTTCTGCTTGAAAATAATGAGCACGAAACAAAGTTTTTTGCGTCATGCGACCAagtgtaatgttaaaattaagatGGTCGAGGACGACGTTTCGACGTTTACGTCAATCGACGACGAAGAAAGGAAGCCGTCTGTCCTGCAAATAAGGAATAACGTTGCTTGCGTCCTAAACATGTCCACTGCTATACCTTTCAAGTACTTTATGAGTAGATTCAGATGTTTCTATTGTCCGAAAGATTTCTATGAATGCGCTGATCTGAGACAGCATACGGTAACTGAACATCCTCATTGTGATATCAAGTTAAAAAGCATGAGATTACGTAATCGACATGATGGGTGCattaaaatagatatagcgACTCTATCTTGCAAGTTGTGCTTCGAACCGATGCAGGATTTGGATTCGTTGATCGATCATCTCATTTCGAATCATAAGGCTAGATACGACAAATCTATCGATTGTAACATGCAGCCATACAAACTCGTGAAGGACAATTTTGCTTGTCCCCTCTGTAGAGAAGTCTTTAGATATTTTAGTTCGTTGCTCAGACACGTCGCTCAGTCCCACACGGATAATAAATACATCTGTGTGTACTGCGGTAAACCGTTTAGAAACGTGTCGAATCTACGCGCACATATTTCCACGAAACACAACACGGTAGTTCACAAATGCAGCAAATGTGACCTCGAATTTGCGTCAAACAGTCATCTCCAGACGCATTTGGGTAGCGCACATGGTGCCAAAGTCATCCAGTGTACGGAATGTCAGGAGAAGTTTATATCAAACTATAGGATGCAAAGACACATGGTAAATGTCCACGGCTCTGGTCACAAATGCGCGTATTGCGGTAAGCTCTTCACGAGGAACTCCCTGATGGTTAACCACGTGAGACGGACTCACTTGAAAGAGAAGAACGTAGAGTGTTCAGTGTGTTTTGAGAGGTTCTTCGACGGGCAACGCTTGAAGATTCATATGGTCAAGCATTACGGGGAGAGGAACTTTCATTGTGATGTGTGCGGGAAGAAGTTTCTCTGGAAGAAGAATCTCATCGGGCACATGTCGTCACATGTCAAGAACGCTAATCAATTGACGAGCTAG
- Protein Sequence
- MCEICEEAKDNFDELVTHLIEEHNLVYNKEVKLVIMKYQLENFKCVLCDQKCSSLIALLTHVSKDHQTIKPYSCSECRQRFNKKWELDTHTRAYHKKEYNCSKCALRFTSYLSLQIHKSNSHIATCNICFKPFATAKKRLEHLKLEHGDDDLTCGFCDKVISTKIGFLRHASKCTEKEEKHSPEELKELIGDGIAVKKASVKTIRNNIACLLNNSTAVPFKFFMNRFRCFYCPKDFNECDDLKEHTKIEHPLCDTTFKCMSMRNRQDAKIKIDISSLFCKLCFEAMKDLETLIDHLISEHKSHYDKTVDSNIQTFSLIKDRFLCPFCGEVFRYFSNVLKHIGRAHSNNNTVCMHCGATFRNSPNLRAHIYKHHKAAKYKCGKCKLEFSCKKYFQTHLGRVHGNKMVECSTCRERFSSVYEKQRHMINVHQSGHKCSYCGKLFTRNSIMVDHVRRTHLKEKNVQCEICCELFFDVHLLRMHMVKHYGERNFHCDLCDVNGPAQTQSFNRRRNLQILFNNTSLCPFKWRGKYLCFYCGEDIPNYEELKKHTKAHGACSDRDRAIRLVKAADAEVKIDISDVTCEICNESFANFDDIVYHLIHKHKLPYDNDVKLSLAVYRLVDLQCLFCEEKFDYFNKLIKHVNVKHPSESYECLECLQIFNKKRDLDAHTRMHHKKDHRCLKCSLTFASYAAFKKHNANSHVSTCNICFKSFSSLKKRLKHMKMEHANEMLKCGFCLKIMSTKQSFLRHATKCNVKIKMVEDDVSTFTSIDDEERKPSVLQIRNNVACVLNMSTAIPFKYFMSRFRCFYCPKDFYECADLRQHTVTEHPHCDIKLKSMRLRNRHDGCIKIDIATLSCKLCFEPMQDLDSLIDHLISNHKARYDKSIDCNMQPYKLVKDNFACPLCREVFRYFSSLLRHVAQSHTDNKYICVYCGKPFRNVSNLRAHISTKHNTVVHKCSKCDLEFASNSHLQTHLGSAHGAKVIQCTECQEKFISNYRMQRHMVNVHGSGHKCAYCGKLFTRNSLMVNHVRRTHLKEKNVECSVCFERFFDGQRLKIHMVKHYGERNFHCDVCGKKFLWKKNLIGHMSSHVKNANQLTS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01439236; iTF_01359962;
- 90% Identity
- iTF_01359962;
- 80% Identity
- -