Tlin003676.1
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- -
- Assembly
- GCA_963932265.1
- Location
- OZ010681.1:15494873-15498909[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.0033 0.32 12.5 1.4 1 23 58 80 58 80 0.99 2 30 4.6 4.4e+02 2.6 0.0 3 23 109 130 107 130 0.88 3 30 2.4 2.3e+02 3.5 0.7 2 23 151 173 150 173 0.94 4 30 0.0034 0.32 12.5 0.9 2 23 180 202 179 202 0.95 5 30 0.09 8.5 8.0 2.1 1 23 206 229 206 229 0.93 6 30 0.059 5.6 8.6 0.8 2 23 232 254 232 254 0.95 7 30 1.2 1.1e+02 4.4 0.1 2 20 260 278 259 280 0.91 8 30 0.00038 0.036 15.5 2.6 1 23 341 364 341 364 0.97 9 30 2 1.9e+02 3.8 0.1 3 23 393 414 391 414 0.94 10 30 0.014 1.3 10.5 0.2 1 23 436 459 436 459 0.93 11 30 0.00018 0.017 16.5 1.9 2 23 465 486 465 487 0.94 12 30 0.025 2.3 9.8 0.5 1 23 523 546 523 546 0.94 13 30 0.0016 0.15 13.5 4.3 1 23 550 573 550 573 0.97 14 30 0.045 4.2 8.9 0.8 2 23 580 601 579 601 0.97 15 30 4 3.7e+02 2.8 0.1 1 17 607 630 607 631 0.86 16 30 0.044 4.2 9.0 0.4 1 23 647 669 647 669 0.95 17 30 0.023 2.2 9.8 2.2 2 23 697 719 696 719 0.95 18 30 2.8 2.6e+02 3.3 1.4 2 23 740 762 739 762 0.95 19 30 0.017 1.6 10.3 5.5 1 23 767 789 767 790 0.96 20 30 0.042 4 9.0 1.5 1 23 794 817 794 817 0.91 21 30 0.0065 0.62 11.6 2.9 2 23 820 842 819 842 0.96 22 30 3 2.8e+02 3.2 0.7 2 20 848 866 847 868 0.92 23 30 0.0054 0.51 11.8 2.3 1 23 916 939 916 939 0.96 24 30 0.0006 0.056 14.8 0.2 1 23 1011 1034 1011 1034 0.90 25 30 6e-06 0.00057 21.1 0.3 1 23 1039 1062 1039 1062 0.95 26 30 0.046 4.3 8.9 5.7 1 23 1067 1090 1067 1090 0.94 27 30 0.0027 0.26 12.8 0.3 2 23 1096 1118 1095 1118 0.93 28 30 0.00016 0.015 16.7 4.0 1 23 1122 1145 1122 1145 0.97 29 30 0.21 20 6.8 0.4 2 23 1152 1173 1151 1173 0.96 30 30 0.046 4.3 8.9 2.3 1 23 1179 1201 1179 1201 0.96
Sequence Information
- Coding Sequence
- ATGTATCTGCTACAAAAACGGCTACGGTGTGCTAGAATTGAAGTAACAGAAGAGGCTTTCTTTCCAGATAAGGGCATAAGGATGCGTCGAGATGCAAATCGACGGCGAAGACAAAATCTACAGATATTGTTCAATAATACCACAGTGATACCGTTCAAAGGACGAGGAAGCTTCAAATGTTTCTACTGTGGGAAAGCAATAGTAGACTATCTGGAATTTAGACAACATACTAAAACCCATAATCCTTGCTCAATAAACGATCGTGCTATTAAACTGATTAAAACAGATGAAGCGGAAGTAAGAGTCGATGTATCGAttataatttgtgaaatatgtAATGAATCTAAAGCTAATTTCGAGGATTTAGTCTCGCATCTGATAGATGAACACAATGTCATGTACGATAAAGAAATAAAGTTGCTGATTATCAAGTACAAACTAGAAGACATGAAGTGTGTTTTATGCGATCAAGACTGTAACTCTCTTATTGGCTTGCTTACGCATGTGAGCAAATATCATGATACAACTAAACTCATGTCCTGTTCCGAATGCCGAcagaaatttaagaaaaaaggCGAATTAGATGCGCATACAAGAGCTTATCATAAAAAAGAATATAATTGCACAAAATGTTCCTTAAGCTTCCAATCGTATTTGGAGCTGCAGAACCACAAAAGTAATTCTCATATCGCAACGTGTAATATTTGCTTTAGAGCCTTTGCTACGGCTAAGAAAAGACTGCAACATTTAAAACTCGAACACGGAAATGATGATTTGCGGTGTGGTTTTTGTGAAAAAGTGATAAGTACGAAGATTGGTTTCTTAAAACATGCTTCCAAGTGTACAGAAATGGATAAGAAGTATTCACGCGAAAATTTAGAAGATTTTATAGGTTTTAACGCCGACGTTCTCAATGCCGAGCGCACTGTTAAAAAGACAAGCGTTAAAATTATACGAAATAACATAGCGTGCCTTCTCAATAATTCTACAGCCGTACCGTTCAAGTTTTTTATGAATAGGTTTAGGTGCTTTTACTGTCCTAAAGATTTCAATGACTGCGACGGTCTAAAGGAGCATACTAAAATGGAACATCCGCAATGCGATACAAAATTCAAGTGCATGTTAATGCGGAATCGTGAATACGGTAAAATTAAAGTGGACGTATCTTCACTGTTTTGTAAACTCTGTTTTGAGGCTATGAAAGATTTAGATTATCTTATAGATCATCTTATTTCTGAACATAAGTCAAATTTCGACAAGACTGTAGATAGCAACGTGCAAGCATTCACACTCGTCAAAGATCGTTACTTATGTCCTTTCTGTGGAGAAGTGTCCAGATACTTCAGTAATGTCCTCAAACATATAAGTCAGGCCCACTCGAATAATAATGCAGTTTGCATGCACTGTGGGGCGACTTTTCGTAATCTGCCTAACTTACGAGCACACATATACAAGCACCACAGACCAGAAAAACAATCTAAATATAAATGTGGAAAGTGTAAGCTTCATTTTGGTTGTAAAAAAGATTACCAGACCCATTTAGGTAGGGTACACGGAAACAAAATGTTCGACTGTCCGACATGTCGGGAGAAATTCCCATCGCCGCACGCTAAAGATAGGCACATGATAAATGTGCATCAATTAGGACACAAATGTTCGCACTGCGGAAAACTATTCCCAAAATACTCGCAAATGATAGATCACGTACGGCGTACTcatttaaaggaaaaaaatgTTCAATGTCAAATCTGCCGCGAGTTATTTTTCGATGTGCACCTTTTGAGATTGCACATGGTTACGCATTGTGGTGAGCGCAAGTTTCAATGCGACGTTTGTGatgttAACGGCCCGGCACAGACGCAAAGTTTTAATAGAAGAAGGAATCTGCAGATATTATTCAACAACACGACCTTGTGTCCGTTTAAATGGCGGGGAAAATACCTATGCTTTTACTGTGGAGAGGATATGGCAAATTACGATGAATTAAAGAAACATACGAAAGGGCATGGCCCTTGTTCCGACAGAGATAGAGCTATACGATTGGTTAAAGCAGCTGATGCTGAGGTGAAAATCGATGTTTCAGATATCACTTGTGAGATTTGTAACGAATGTTTTATTAACTTTGATGAAATTGTCAATCACTTGAAACACAAACACGAATTGCCTTACGATACTGGTGTCAAATTATCCTTAGCTATATATCGTCTAACAGATCTTCAGTGTTTATTCTGCGAGGACAAATTCAATTACTTTAATAAACTTATCAAACACGTCAACAGCAGACATCCGAGCGAAAGTTTCGAATGTTGTGAATGTTTTCAGATGTTCAATAAGAAGCGGGACTTAGATGCTCACACGCGGATGCATCACAAAAAAGACTATAGATGTCTTAAATGTTCTGTAACTTTCGCTTCCTATGCCGCATTTAAGAAGCACAATTCGAATTCTCACATCTCTACGTGCAATGTGTGTTTCAAAAGTTTCTCTTCGCTTAAGAAGCGCTTGAAACATATGAAGCAGGAGCATGCGGATGAcatgctccaatgcggattttGCTTGAAAACAATGAGCACAAAACAAAGCTTCTTACGACACGCGACTAAATGTAACTTTAGGATTAACAGCTCAGAAAATGAAGTTGTCGATGATGAAGACAGAAAGCCATCTGTTATTCAAATAAGAAATAATGTAGCGTGCATTCTAAATATGTCAACTGCTATTCCCTTCAAGTACTTTATGAGTAGGTTTAGATGTTTCTACTGCCCTAAAGATTTTCAGGAATGCTCAGACTTGAGGGAACACACAGTAACGGTACATCCACATTGTGATATCAAGCTTAAGAGCATGAAATTGCGTAACAGACACGATGGGTGCATTAAGATAGATATCGCGTCTTTGTCTTGCAAATTATGTTTTGAGCCAATGCAAGACTTGGAAGCCTTGATCGATCATCTCATTTCCAATCATAAAGCGAGCTATGATAAGTCTATAGACTGTAATATGCAGCCATACAGGTTAATTAAAGACAATTTCGTTTGTCCCCTCTGTGGTGAGGCTTATCGATATTTCAGTTCGTTGCTGAGGCACGTCGGTAATTTCCATACggataataaatttatttgtgtCTATTGCGGAAAGCCGTTTAGAAACGTTTCAAATTTAAGGGCACATGTGTCCAGTAAGCATAATACTGCAGTCCATAAATGCAGTAAGTGTGATATGGAGTTTAGTTGTAATAGCCACTTACAAACGCATTTGGGCAGCGCACACGGGGCAAAGGTGATACAATGTTCGGAGTGTGAAGAAAAGTTTATATCTAACTACAGAATGCAGAGACATATGGTCAATGTACACAGATCTGGACATAAGTGTACATTTTGTGGGAAACTTTTCACGAGAAATTCGTTAATGGTAAATCATTTAAGACGAACGCATTTGAAAGAGAAAAATGTTGAGTGTACAGTGTGTTTTGAACGATTCTTCGATGGACAGCGACTGAAAATACATATGGTTAAGCATTACGGGGAACGAAATTTTCACTGCGATGTGTGTGGAAAGAAATTCTTGTGGAAAAAGAATCTGAGAGGACACATGTCCTcgcatataaaaaatacaaatcaaattctaaataatattaCCTAG
- Protein Sequence
- MYLLQKRLRCARIEVTEEAFFPDKGIRMRRDANRRRRQNLQILFNNTTVIPFKGRGSFKCFYCGKAIVDYLEFRQHTKTHNPCSINDRAIKLIKTDEAEVRVDVSIIICEICNESKANFEDLVSHLIDEHNVMYDKEIKLLIIKYKLEDMKCVLCDQDCNSLIGLLTHVSKYHDTTKLMSCSECRQKFKKKGELDAHTRAYHKKEYNCTKCSLSFQSYLELQNHKSNSHIATCNICFRAFATAKKRLQHLKLEHGNDDLRCGFCEKVISTKIGFLKHASKCTEMDKKYSRENLEDFIGFNADVLNAERTVKKTSVKIIRNNIACLLNNSTAVPFKFFMNRFRCFYCPKDFNDCDGLKEHTKMEHPQCDTKFKCMLMRNREYGKIKVDVSSLFCKLCFEAMKDLDYLIDHLISEHKSNFDKTVDSNVQAFTLVKDRYLCPFCGEVSRYFSNVLKHISQAHSNNNAVCMHCGATFRNLPNLRAHIYKHHRPEKQSKYKCGKCKLHFGCKKDYQTHLGRVHGNKMFDCPTCREKFPSPHAKDRHMINVHQLGHKCSHCGKLFPKYSQMIDHVRRTHLKEKNVQCQICRELFFDVHLLRLHMVTHCGERKFQCDVCDVNGPAQTQSFNRRRNLQILFNNTTLCPFKWRGKYLCFYCGEDMANYDELKKHTKGHGPCSDRDRAIRLVKAADAEVKIDVSDITCEICNECFINFDEIVNHLKHKHELPYDTGVKLSLAIYRLTDLQCLFCEDKFNYFNKLIKHVNSRHPSESFECCECFQMFNKKRDLDAHTRMHHKKDYRCLKCSVTFASYAAFKKHNSNSHISTCNVCFKSFSSLKKRLKHMKQEHADDMLQCGFCLKTMSTKQSFLRHATKCNFRINSSENEVVDDEDRKPSVIQIRNNVACILNMSTAIPFKYFMSRFRCFYCPKDFQECSDLREHTVTVHPHCDIKLKSMKLRNRHDGCIKIDIASLSCKLCFEPMQDLEALIDHLISNHKASYDKSIDCNMQPYRLIKDNFVCPLCGEAYRYFSSLLRHVGNFHTDNKFICVYCGKPFRNVSNLRAHVSSKHNTAVHKCSKCDMEFSCNSHLQTHLGSAHGAKVIQCSECEEKFISNYRMQRHMVNVHRSGHKCTFCGKLFTRNSLMVNHLRRTHLKEKNVECTVCFERFFDGQRLKIHMVKHYGERNFHCDVCGKKFLWKKNLRGHMSSHIKNTNQILNNIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00288234;
- 90% Identity
- -
- 80% Identity
- -