Csem001019.1
Basic Information
- Insect
- Cecidostiba semifascia
- Gene Symbol
- -
- Assembly
- GCA_900474235.1
- Location
- UCQR01071911.1:7332-11934[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.39 39 5.5 5.8 1 23 339 361 339 361 0.97 2 19 0.00044 0.045 14.8 0.3 1 23 410 432 410 432 0.98 3 19 0.016 1.6 9.9 0.6 1 20 489 508 489 510 0.95 4 19 0.015 1.5 9.9 1.5 2 23 551 572 550 572 0.97 5 19 0.0046 0.47 11.5 0.4 1 23 618 640 618 640 0.97 6 19 0.00038 0.039 15.0 0.1 1 23 646 668 646 668 0.98 7 19 0.0019 0.19 12.8 4.0 2 23 708 730 707 730 0.90 8 19 0.48 48 5.2 0.5 2 15 739 752 738 761 0.78 9 19 0.00013 0.013 16.4 1.2 2 19 794 811 793 816 0.89 10 19 5.5e-05 0.0055 17.6 0.3 1 23 849 871 849 871 0.93 11 19 0.18 18 6.6 0.0 2 20 928 946 927 946 0.95 12 19 0.00078 0.078 14.0 0.1 2 23 965 986 964 986 0.96 13 19 0.0037 0.38 11.8 5.0 1 23 1010 1032 1010 1032 0.97 14 19 0.027 2.7 9.2 4.4 1 21 1051 1071 1051 1075 0.89 15 19 0.041 4.1 8.6 0.6 2 23 1134 1156 1133 1156 0.93 16 19 0.0012 0.12 13.4 1.2 2 23 1184 1206 1183 1206 0.89 17 19 0.0012 0.12 13.4 0.4 1 23 1213 1237 1213 1237 0.94 18 19 0.015 1.5 9.9 1.6 1 23 1242 1265 1242 1265 0.97 19 19 0.014 1.4 10.0 0.4 3 23 1297 1318 1295 1318 0.95
Sequence Information
- Coding Sequence
- ATGGAGGACGTCGTCGAGATCAGTGGCTTGGAAAACGCCTGCCGCCTCTGCCTGACCACCGAGCAAACGAGGTCCTCGATATTTGGCGTGCCGCACGTCTCCGTGCCCTTCGTTGAGAAAATACGGGCTTGTCTCTCTATCAAGGTTTCTTCTAATGATAAATTGTCAACGCTAGTATGTACATCTTGCATCAAAAATATCAACCACTGGCACTCCTACAAGGATACATGTTTGCGCTCCCAAGAAAAACTCCAACAGTGGCTGATTTCGAAGCAAAACACAGCCGTGACGATGGTGACCATAAAAGAGGAGCCAATGGATGACGATGTTCCAAATAATACACAAAATGAATCTAATGCTACCAATCATGCTGTACAAAATGGTATGGATGTTGACTCAGAAACTAATGCTGCACCTGCCACTGGTTCTGTGGCTAAGGCATCGGAGTTGGAGAAATCTCCAAAAGTCAGTGAGACAGATAAAGAGATACTTCCGgagatacaaataaaaaatgaaccTCTAGATACAGAAGATGAAGATGATTGCAATGTTGATATAGAGTCGGTAAATAGTGGAGAACTTTTAATCAACCCAATGGCAGTGGCAGCCAACAATGTGAACACTGACAGAATAATGGAAGCAGattctacacaaaaatttgGAGCAAGAAGGAAATATCGACGTGGACCTCATACGCACTTTAGAGGAGCCAaattattcaagaaaaaatgtgtgaattgtaaaatttacttgCATTCAAAACACTCATTCATGCAGCATATGTCTCGATACCATGGCATTGTCAATAGCTTAGGATCAAACGAAGTCGTCAAAGTTGTGAATCAACCGCCAGTGAACAAGCAAAAATCGAAACTCTCTGAGCATCCTGATAACGCGGCACTCTCTGCAGAAATTCAGCAAGAAAGCAATCCCGAAGACGCAGAATTTGAGCAGATGATAAAAACTGACCCTCTAACACCAGTTCAAAAGAACATCATTGGCCAGTTGAAAACTTTCTCTTGCTACTCGTGCAAACAAACTTTCTTCGATAGAAGACATACTTTGAATCATATCAGACAGCATATGCCTGATTTACGACCGTACACTTGCATCGCTTGCCTTACTGAGTTCTCTGACAGATCAATGTATAAACTTCATTGTGGTGCATCCTTTGAATGTGCTATGAAAATTGCTCTTGTTGTACCCAAAGGAGGCaatgaaaagtattttacatGTAACATGTGTCTTCGACCCTTTGCTAATCGAAGGGAATTGTTAACACACTTAGCTATGCATGCTGATAAGCAGCACAAGCAGCTAGCACAGCAACCTTTGAGGTCTCCACCAAAACTTAATCCTATAGCCACGCCTTCACTAGCTCCTACAGCGGAGTCCTCGCCTTCAAAACGTTCCATTACCAACAAAATTGCAGGACCATACATGAATGGTGATCCGGCTCACAATCACACTTGTGACCTGTGTGGTATGATCTACAGGTACAAGCCAAACATGTTCAAACATCGCGATCTTTGCTCTTCTCTGGCGGAAAATATTCGCACGTCTTACAGATGTGCTCACTGCAGCATGACCTACCTTGTGTACAAAAAGTTCTACTCGCACGTGTTCAGCGATCACAAGAAGCGCGAGATCACTTGCTTTACGTGCCACGCAAGATTCCCTACAGCTGATGAGTACCTCGCTCATCACGAGACGCATCGCGTTTTCTCAAAGGACAAAGAAAATCTCAATGAAGTCGCGAATGAacaacatcagcagcaactGGAAAACGACAGCTCTATGTTGGATGATAAGAATACCACTGAGGATCCTTTGGATGCTAGTGAAAAGCCATTCAATTGCGCTCTTTGCAGCGAAAGATTCGCTACGAAGCTTGAACTCACGGAGCATCGCAATCTTCACCTGAAGGTAAAGATCTATTCGTGTGTCATATGTCGCAGCATGTTTAGCAGCTCTGGGGCTCTCGAGATACACATGAAGGAGCACGGCATTGATGACGCGGTCGAGCAAAACGCCAATAGCTCATGCATCGAGTATAACTCGCATAGCAGCATGAATGAGTCGTCTATGTCGGCTACGTCTGATCCGGGAGGAAAATTCCATCATTGTTACCCGTGCGGTAAAAACTTTTCCAACTATGCGAATCTAAAAAGACATGAGAGGAATTTGCATATCAAGAACATGAAGCGCCGCTGGAGCTGCGACGTTTGTAAGCGACGTTTCAAGTCATCCCAAGCTCACGATGAACATGTATTGTCGGCTCATGCAATGCATCCATCTCAAATGCCGCGTCAGCCACAAACACCACCACagGTTGTACCGACGCCCCAGTTTTCTGCTACAACTGGCAAACCGTTAATGCAGTGTCCCAAGTGCCCGAAGACCTTTACCTACCAAGGAAACCTCATACTTCATTGTCAGAATGTCCACAAAGAGAGCCATTACGAACGTGCACAACCCAGTACTATGCGACAATCAGCTCCACCGGCTCTCCGCCGTACGATACCTGTCCTAACACCGCGTGGTTACGCTTGTGACATCTGCGGTAAAACCTTCCGCGAGGAACAGTCTCTTAAGACTCATCGTGGTTGGCACTTACGTTCAAACTACCGATTGAAAGTCGACCAAAACGCCAGTCTCAATGAGAAGACTATGAGTGCTCCTGGATATACGATGACTTCCGCTATGCCAAAGCCAGCCAAAGCTAGAAAGTCTTTTCCCAACAATCCATCTCAGAAGCAGCTGAATGCTCTCGCTAGTTTGCAATGCCAGGTTTGCGATGATCGTTTTGCTGACGTGGAGATGCTGAGGAAACATCTTTGGGACGTGCACTGTGCTCGCAACAAACCTGAGAAGAGCTTCACGACAGATCTGCAGTGCGAACTCTGCACTAACAAGTTCTCGGACGAAGAATCACTAGAGAACCACATGATCTGGCACTCTCAGAATCCCATACTCAGTGGACCGATAAATAACAGAGTCTCAGTTTCCGAAGTCCCTAAAAAGGCTTTCTGTTGTGATGTTTGCGGTAAGTACTACAGCAATCGTAAGCTCTTCCTACGTCATAAGAAACTGCACAAGGTTCTGCCCGCTAGTACCATGATGAATCTGCATTCGCTGCAAACCAAACGTCATTACTGTCACGCTTGTCAAAAGAACTTCGCCACTGAAGCTTCACTCCGGCGACATAAAGCTTCGCCTTGTCATCAGAATGTGGCACGTTCACAGATGCAggcttcaaagaaaataacaacGACGGCACTGGTGCATCACCCACCGCCGGACCCTGCTACTGAAATCAAAGACGAGCCTCTCGAGATGGATTACTCCAGTTTACCAACACGTGGCGCTCATGGTCAACTTTTAAAGAAGAGACCGGTGACTTGCCACATTTGCAAAATGATTTTCCCGAATATGAGTGTACTCTACCAGCACAAGCAGCTTGCGCACAAGCAAGCCGCTTCTCCCATTAAAAGTTTGGCTCCGGAGCCGAAGGATTGCGTGCCGGTCGTCAGCAACCAAGGTCTCGTCAGCTGCAACCTTTGTGGCAAACAATTCCCTGGACTTTCGAATCTGAAGCAGCACTTCGCCCATAAGCACAAGACTAAGGGCGCCTCGTTCCCGTGCTACGCGCAGGGCTGCAAGCTAGTTTTCAGCAGCCTTAGTTCATTGAAGAACCACGAAACGACGCATTCGAGCATGATCTTCAACTGTCTGTTGTGTGACAGGCACGTGTTCTCCAAGGCCGCAATGACCAAGCATATGCTAACCATGCACAAGGGCATTTACCAATCTGGGGCGAACAAGAGTACTCTTTGGTCTGAGACGGATCTGACGAATTATACTATAAAGAACTGCCAGAGCACAGCTTGTCCCAAGTGCAAAGTCAAGTATCCCAATTTGCGAGCACTAAAGATTCACTATCTCAAGTTCCATGATAACAAGTCATAG
- Protein Sequence
- MEDVVEISGLENACRLCLTTEQTRSSIFGVPHVSVPFVEKIRACLSIKVSSNDKLSTLVCTSCIKNINHWHSYKDTCLRSQEKLQQWLISKQNTAVTMVTIKEEPMDDDVPNNTQNESNATNHAVQNGMDVDSETNAAPATGSVAKASELEKSPKVSETDKEILPEIQIKNEPLDTEDEDDCNVDIESVNSGELLINPMAVAANNVNTDRIMEADSTQKFGARRKYRRGPHTHFRGAKLFKKKCVNCKIYLHSKHSFMQHMSRYHGIVNSLGSNEVVKVVNQPPVNKQKSKLSEHPDNAALSAEIQQESNPEDAEFEQMIKTDPLTPVQKNIIGQLKTFSCYSCKQTFFDRRHTLNHIRQHMPDLRPYTCIACLTEFSDRSMYKLHCGASFECAMKIALVVPKGGNEKYFTCNMCLRPFANRRELLTHLAMHADKQHKQLAQQPLRSPPKLNPIATPSLAPTAESSPSKRSITNKIAGPYMNGDPAHNHTCDLCGMIYRYKPNMFKHRDLCSSLAENIRTSYRCAHCSMTYLVYKKFYSHVFSDHKKREITCFTCHARFPTADEYLAHHETHRVFSKDKENLNEVANEQHQQQLENDSSMLDDKNTTEDPLDASEKPFNCALCSERFATKLELTEHRNLHLKVKIYSCVICRSMFSSSGALEIHMKEHGIDDAVEQNANSSCIEYNSHSSMNESSMSATSDPGGKFHHCYPCGKNFSNYANLKRHERNLHIKNMKRRWSCDVCKRRFKSSQAHDEHVLSAHAMHPSQMPRQPQTPPQVVPTPQFSATTGKPLMQCPKCPKTFTYQGNLILHCQNVHKESHYERAQPSTMRQSAPPALRRTIPVLTPRGYACDICGKTFREEQSLKTHRGWHLRSNYRLKVDQNASLNEKTMSAPGYTMTSAMPKPAKARKSFPNNPSQKQLNALASLQCQVCDDRFADVEMLRKHLWDVHCARNKPEKSFTTDLQCELCTNKFSDEESLENHMIWHSQNPILSGPINNRVSVSEVPKKAFCCDVCGKYYSNRKLFLRHKKLHKVLPASTMMNLHSLQTKRHYCHACQKNFATEASLRRHKASPCHQNVARSQMQASKKITTTALVHHPPPDPATEIKDEPLEMDYSSLPTRGAHGQLLKKRPVTCHICKMIFPNMSVLYQHKQLAHKQAASPIKSLAPEPKDCVPVVSNQGLVSCNLCGKQFPGLSNLKQHFAHKHKTKGASFPCYAQGCKLVFSSLSSLKNHETTHSSMIFNCLLCDRHVFSKAAMTKHMLTMHKGIYQSGANKSTLWSETDLTNYTIKNCQSTACPKCKVKYPNLRALKIHYLKFHDNKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00286670;
- 90% Identity
- iTF_01274751; iTF_01036484; iTF_01487253; iTF_01037270; iTF_01035675; iTF_00286670;
- 80% Identity
- -