Ppup002030.1
Basic Information
- Insect
- Pteromalus puparum
- Gene Symbol
- -
- Assembly
- GCA_012977825.2
- Location
- Scaffold:621407-626006[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.28 27 5.5 5.8 1 23 341 363 341 363 0.97 2 19 0.00032 0.03 14.7 0.3 1 23 412 434 412 434 0.98 3 19 0.01 0.94 10.1 0.5 1 20 491 510 491 512 0.94 4 19 0.024 2.3 8.8 2.3 2 23 553 574 552 574 0.97 5 19 0.0034 0.32 11.5 0.4 1 23 621 643 621 643 0.97 6 19 0.00028 0.026 15.0 0.1 1 23 649 671 649 671 0.98 7 19 0.003 0.28 11.7 4.1 2 23 711 733 710 733 0.89 8 19 0.22 21 5.8 0.7 2 15 742 755 741 764 0.78 9 19 9.7e-05 0.0091 16.4 1.2 2 19 797 814 796 819 0.89 10 19 3.6e-05 0.0034 17.8 0.2 1 23 852 874 852 874 0.93 11 19 0.13 12 6.6 0.0 2 20 931 949 930 949 0.95 12 19 0.0015 0.14 12.7 0.1 2 23 968 989 967 989 0.97 13 19 0.0027 0.25 11.8 5.0 1 23 1013 1035 1013 1035 0.97 14 19 0.005 0.47 11.0 4.4 1 21 1054 1074 1054 1078 0.89 15 19 0.017 1.6 9.3 0.4 2 23 1137 1159 1136 1159 0.93 16 19 0.0038 0.36 11.4 1.0 3 23 1188 1209 1187 1209 0.90 17 19 0.00068 0.063 13.7 0.2 1 23 1216 1240 1216 1240 0.93 18 19 0.064 6 7.5 0.8 1 23 1245 1268 1245 1268 0.94 19 19 0.01 0.95 10.0 0.4 3 23 1300 1321 1298 1321 0.95
Sequence Information
- Coding Sequence
- ATGGAGGACGTCGTCGAGATCAGTGCTGGCTTGGAAAACGCCTGCCGTCTCTGCCTGACCACCGAGCAAACGAGGTCCTCGATATTTGGCGTGCCGCACGTCTCCGTGCCCTTCGCTGAAAAAATACGCGCTTGTCTGTCTATACAGGTTTCTTCTAATGACAAATTGTCAACACTAGTATGTACAACCTGCATCAAAAATATCAACCACTGGCACTCGTACAAGGATACATGTCTGCGCTCCCAGGAAAAACTCCAACAATGGCTGATATCAAAGCAAAACCCGGCAGCTGTGCCAATGGTGACCATAAAAGAGGAGCCAATGGATGAAGGTGTTCCAAATAATACACATAATGAATCTACTGCTACCAATCATGATGGACAGAATGGTATGGATGTTGACTCAGAAACTAACGCTGCACCAAACACTGGTCCAGAACTGGAGAAAGCCTCAAAAGCTGGTGAGGCAGATAAAGAGATGCTTCAGGAGATGCAAATCAAAAGTGAACCTCTAGATACAGAAGATGAAGATGATTGCAATGTGGATATAGAATCAGTAAATAGTGGAGAACTTTTAATCAACCCAATGGCAGTGGCAGCCAATAATGTGGACACTGACAGAATAATGGAGGCAGATTCTACCGAAAAATTTGGCGCAAGAAGGTTTGCAGCAAGAAAGAAATATCGGCGTGGACCTCACACGCACTTTAGAGGAGCCAAGTTATTCAAGAAAAAATGTGCGCATTGTAAAATTTACTTGCATTCTAAACACTCATTCATGCAACATATGTCTCGGTACCATGGCATTGTCAACAGTTTAGGATCAAATGAAGTGGTCAAAGTTGTGAATCCACCACCAGTGAACAAGCAAAAATCAAAACTCTCTGAGCATCCTGACAATGCGGAACTCTCTGCAGAAATTCAGCAAGAAAGTAATCCCGAAGACGCGGAATTTGAGCAGATGATAAAAACTGATCCTCTAACACCAGTTCAAAAGAGCATCATTGGACAGTTGAAAACTTTCTCTTGCTACTCGTGCAAACAAACTTTCTTCGATAGAAGACACACTTTAAACCATATCAGACAGCATATGCCCGATTTACGACCATATACTTGCATTGCTTGCCTTACTGAGTTCTCTGACAGATCAATGTATAAACTTCATTGCGGTGCATCATTTGAATGTGCTATGAAAATCGCTCTTGTAGTGCCCAAAGGAGGCAATGAAAAGTACTTTACATGTAACATGTGTCTTCGACCTTTTGCTAATCGCAGGGAATTGTTAACGCATTTAGCTATGCATGCTGATAAGCAACACAAACAGCTGGCCCAGCAACCATTGAGATCTCCACCAAAATTAAATCCTATTGCCACGCCTTCACTAGCTCCCACAGCGGAGTCTTCGCCTTCAAAACGTTCCATTACTAACAAAATCGCAGGACCATACATGAATGGTGATCCAGCTCACAACCACACTTGTGACCTGTGTGGTATGATCTACAGGTACAAGCCGAACATGTTCAAGCATCGCGAACTGTGCTCTTCTCTGGCAGAAAATATTCGCACGTCCTACAGATGTGCTCACTGCAGCATGACCTACCTTGTGTACAAAAAGTTCTACTCGCACGTGTTCAGCGATCACAAGAAGCGTGAGATCACTTGCTTTACGTGCCACGCAAGATTCCCCACAGCAGATGAATACCTTACTCATCATGAGACGCATCGCGTTTTCCCAAAGGACAAAGAGAACGTCAATGAAGTCGCAAATGAACAGCAACATCAGCAGCAACTGGAGAATGACAGCTCGGTGTTGAACGACACGAAAGCCTCTGAAGATCCTCTGGACGCCAGTGAAAAGCCATTTAATTGCGCTCTTTGCAGCGAAAGGTTCGCTACAAAACTTGAACTCACGGAGCATCGCAATCTCCATCTGAAGGTAAAGATCTACTCGTGCGTCATATGTCGCAGCATGTTTAGCAGCTCTGGAGCTCTCGAGATTCACATGAAGGAGCACGGCATTGATGACGCGGCCGAGCAGAATGCCAATAGCTCATGCATCGAGTACAACTCGCAGGGCAGTATGAATGAGTCGTCTATGTCAGCTACGTCTGATCCAGGAGGAAAATTCCATCATTGCTACCCGTGCGGTAAAAACTTTTCTAACTATGCGAATCTGAAAAGACATGAGAAGAATTTGCATATCAAGAACCTGAAACGCCGCTGGAGCTGCGACATTTGTAAGCGACGTTTCAAGTCATCCCAAGCTCACGACGAGCATGTATTGTCGTCTCATGGAATGCATCCATCTCAAATGCCTCATCAGTCACAAACACCACCACAGGTTGTACCGACACCCCAGTTTTCTGCTACGACTGGCAAACCTTTAATGCAGTGTCCGAAGTGCCCGAAGACCTTTACCTACCAAGGAAATCTTATTCTTCATTGTCAAAATGTCCACAAAGAGAGCAATTACGAACGTGCGCAACCCAGTGCTATGCGACAGTCAGCTCCACCGGCTCCCCGCCGTGCAATGCCTATTGTAACCGCGCGTGGTTACGCATGTGACATCTGCGGTAAAAGCTTCCGTGAGGAACAGTCTCTTAAGACTCATCGTGGTTGGCATTTACGTTCCAACTACCGATTGAAAGTCGACCAAAACGCCAGTCTCAACGAGAAGGCTATGAGTTCTCCTGGCTACACGATGACGTCGGCTATACCAAAGCCAGCCAAGGCTAGAAAGTCTTTTCCTAACAATCCATCCCAGAGGCAGCTAAGTGCCCTCGCAAGTTTGCAATGCCAGGTTTGTGACGATCGCTTTGCTGACGTGGAGATGCTGAGGAAACATCTTTGGGACGTCCACTGTGCACGCAACAAACCTGAGAAAACCTTCACAACAGATCTGCAGTGTGAACTTTGCACTAACAAGTTCCCAGACGAAGAAGCATTAGAGAGTCACATGAAGTGGCATGCTCAGAATCCCATTCTCAGTGGACCGATTAATAACAGAGTCCCAGTTTCTGAGGCCCCTAAAAAGTCTTTTTGTTGCGACGTTTGCGGTAAGTACTACAGCAATCGTAAGCTCTTCTTGCGTCATAAGAAATTGCACAAGGCCCTGCCCGCTAGTACCATGATGAACTTGCATTCGCTACAAAACAGACGTCATTACTGCCACGCTTGCCAAAAGAGCTTCGCCACCGAAGCTTCACTAAGGCGACACAAAGCTTCACCTTGTCATCAGAACGCAGCGCGTTCACAGATGCAGGCTTCAAAGAAAATAACGACTACAGCACTCGTGCATCATCCACCGCCGGATCCTATGCCTGAAATCAAAGACGAGCCTCCCGAGATAGATTACTCAAGTCTACCAACACATGGCGCTCATGGTCAACTTTTAAAGAAGAGACCGGTTACTTGCCACATTTGCAATATGATATTCCCGAATATGAGTGTACTTTACCAGCACAAGCAGCTTGCGCACAAGCAATCCGCTAGTTCCAGTAAAAGTCCGGCTCTGCCGCAGAAGGATTGCGTGCCGGTCGTTAGCAGCCAAGGTCTTGTCGCCTGCAATCTATGTGGTAAACAATTCCCTGGAATTTCTAATCTGAAGCAGCATTTCGCCCATAAGCACAAGACTAAAGGAGCCTCGTTCCCGTGCTACGCACCGGGCTGCAAACTAGTTTTCAGCAGCCTTAGTTCATTGAAGAACCACGAAACGACGCATTCGAGCATGATATTCAACTGTCTGTTGTGTGACAGGCACGTGTTCTCCAGAGCAGCAATGACCAAGCATATGCTAGCCATGCACAAGGCCATCTTCCAATCCGGGGCGGACAAGAGTACTCTTTGGACTGAGACGGATCTGACGAATTATACTATAAAGAATTGTCAGAGCACAGCTTGTCCCAAGTGCAAAGTCAAGTATCCTAATTTGCGAGCACTAAAGATTCACTATCTCAAGTTCCACGATAACAAGTCATAG
- Protein Sequence
- MEDVVEISAGLENACRLCLTTEQTRSSIFGVPHVSVPFAEKIRACLSIQVSSNDKLSTLVCTTCIKNINHWHSYKDTCLRSQEKLQQWLISKQNPAAVPMVTIKEEPMDEGVPNNTHNESTATNHDGQNGMDVDSETNAAPNTGPELEKASKAGEADKEMLQEMQIKSEPLDTEDEDDCNVDIESVNSGELLINPMAVAANNVDTDRIMEADSTEKFGARRFAARKKYRRGPHTHFRGAKLFKKKCAHCKIYLHSKHSFMQHMSRYHGIVNSLGSNEVVKVVNPPPVNKQKSKLSEHPDNAELSAEIQQESNPEDAEFEQMIKTDPLTPVQKSIIGQLKTFSCYSCKQTFFDRRHTLNHIRQHMPDLRPYTCIACLTEFSDRSMYKLHCGASFECAMKIALVVPKGGNEKYFTCNMCLRPFANRRELLTHLAMHADKQHKQLAQQPLRSPPKLNPIATPSLAPTAESSPSKRSITNKIAGPYMNGDPAHNHTCDLCGMIYRYKPNMFKHRELCSSLAENIRTSYRCAHCSMTYLVYKKFYSHVFSDHKKREITCFTCHARFPTADEYLTHHETHRVFPKDKENVNEVANEQQHQQQLENDSSVLNDTKASEDPLDASEKPFNCALCSERFATKLELTEHRNLHLKVKIYSCVICRSMFSSSGALEIHMKEHGIDDAAEQNANSSCIEYNSQGSMNESSMSATSDPGGKFHHCYPCGKNFSNYANLKRHEKNLHIKNLKRRWSCDICKRRFKSSQAHDEHVLSSHGMHPSQMPHQSQTPPQVVPTPQFSATTGKPLMQCPKCPKTFTYQGNLILHCQNVHKESNYERAQPSAMRQSAPPAPRRAMPIVTARGYACDICGKSFREEQSLKTHRGWHLRSNYRLKVDQNASLNEKAMSSPGYTMTSAIPKPAKARKSFPNNPSQRQLSALASLQCQVCDDRFADVEMLRKHLWDVHCARNKPEKTFTTDLQCELCTNKFPDEEALESHMKWHAQNPILSGPINNRVPVSEAPKKSFCCDVCGKYYSNRKLFLRHKKLHKALPASTMMNLHSLQNRRHYCHACQKSFATEASLRRHKASPCHQNAARSQMQASKKITTTALVHHPPPDPMPEIKDEPPEIDYSSLPTHGAHGQLLKKRPVTCHICNMIFPNMSVLYQHKQLAHKQSASSSKSPALPQKDCVPVVSSQGLVACNLCGKQFPGISNLKQHFAHKHKTKGASFPCYAPGCKLVFSSLSSLKNHETTHSSMIFNCLLCDRHVFSRAAMTKHMLAMHKAIFQSGADKSTLWTETDLTNYTIKNCQSTACPKCKVKYPNLRALKIHYLKFHDNKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00286670;
- 90% Identity
- iTF_00287503;
- 80% Identity
- -