Csub026997.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- lrrfip2
- Assembly
- GCA_011634745.1
- Location
- JAABKK010006142.1:1-2569[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-72 1.7e-68 231.8 19.1 94 299 1 193 1 194 0.94 2 2 0.013 1.8e+02 1.8 3.7 209 246 212 248 196 268 0.61
Sequence Information
- Coding Sequence
- GATGTTGAAGAACGTTTTCGTAAGGCGATGATAGCAAATGCTCAATTAGACAATGAACGTGCATCACATAcatatcaaattcaattgcTGAAAGATAAATTAGAGGAAATGGAAGAGACACACGCCCAATTGCAACGTGAACATAAAGATAAATGTCGTGACCACGATGCCTTAAAACGTAACAATGATAAATTAAAGGAAGATTTGAAATTAGTTCAAGGCCAATTAAGTGAACGAGATACATTAATTTCGGAACAAGGTTTAACAATAGTTATTGTTGAAAATGAGGATGGTACCGATGCTAAACGTGCTCTAGTCAGTGTTGAAAACGCACATTTATTAGATTCTTTCCAAGGATCATTAgATGTCCGATTAAAGAAGTTTTCAGAAGAAaaacaatcattaaaattcgaAATAGAACAATTACATCAGCAACTAATTGATGCAAAAACTCAAAGAAGATCGGGATCATTAAATGGTCCACTGGGAGATGATGATTATGAAGATGCACaaagAGAAGCTAACAAACTAATAGCagactataaatataaattaacaaaagcaGAACAAGAAATTGCAAGTCTGCAAGCAAGCTTAGCGCGTTCGGAAACTCAAGTTATTCGATATAAAAGCACGGCAGACGCAACTGAAAAAGCCGAGGCTGAACTAAAAATAGAACGCAGAAAATTGCAAAGAGAGaaTCGagaaataatggaaaaattggAGGAATTAGAAACAGCTAATAATCATTTACTAAAACGTTTggataaacttaaaaatgctAAAAGTGCTTTACTCAAAGATCTATGA
- Protein Sequence
- DVEERFRKAMIANAQLDNERASHTYQIQLLKDKLEEMEETHAQLQREHKDKCRDHDALKRNNDKLKEDLKLVQGQLSERDTLISEQGLTIVIVENEDGTDAKRALVSVENAHLLDSFQGSLDVRLKKFSEEKQSLKFEIEQLHQQLIDAKTQRRSGSLNGPLGDDDYEDAQREANKLIADYKYKLTKAEQEIASLQASLARSETQVIRYKSTADATEKAEAELKIERRKLQRENREIMEKLEELETANNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01168426;
- 90% Identity
- -
- 80% Identity
- -