Ccar058485.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000042.1:441088-445440[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.2 1.5e+04 -2.1 0.0 21 30 92 101 82 112 0.84 2 9 0.98 6.9e+03 -1.0 0.0 23 44 122 143 118 147 0.83 3 9 0.00072 5.1 9.1 0.0 22 46 177 201 174 206 0.89 4 9 0.08 5.7e+02 2.5 0.0 24 52 235 263 231 264 0.85 5 9 0.066 4.7e+02 2.8 0.0 23 44 262 283 256 291 0.86 6 9 0.017 1.2e+02 4.6 0.0 23 52 318 347 307 348 0.86 7 9 0.92 6.5e+03 -0.9 0.0 23 44 374 395 364 402 0.80 8 9 0.33 2.3e+03 0.6 0.0 23 52 430 459 425 466 0.87 9 9 0.008 57 5.7 0.0 23 44 486 507 484 511 0.90
Sequence Information
- Coding Sequence
- ATGTTTCAGGAAATTGAACAGGAAGATGATTTGAGGCCAGTTGAAGACAACACCTGGGCATCTGATCCTCtggaaaataatttcattaaaacagaaaagGATTCAGGCGATTGTGAAGAGGTAGATGTTAATGTGGAAAAATCAAATGGGCAACTGTTGTATACGAATAGAGACTATAGTGATCATGAAGGCAGTGTATGTAGTGCAACACATGTTATCAAAAGTAGCGATTCTAAATTAAACAGCCGGTCGACGCAGATGGTACTTCATAGTAGTGCTAAGCCATTCAAATGCGATATCTGTGAAAAAGAATTTCTGTGTAAAAGTCGTTTGGACAGTCACATATTTACGCATACGGGTGCGAGGCCATTCAAATGCGATATTTGCGAAAAAGAATTCAATCGCAAAGACAGTCTGTCTCGGCACATGTTTATACATGGCGATACTAAGCGATTTAAGTGTGATGTATGTCAGAAAGAATTCACGTTGAAGGGAACGCTATCGATTCATATGTTAACACATGTTGGCGATAAACCGTACACGTGCGATCTATGCGATAAACGATTCCGTTGGAGTAAAAATCTAACGAATCACATGTTGTTACATAGCGGTAAATCGTTTAAATGCGATTTCTGCGAAAAAGAATTTCCATTTAAAAGTCGTCTAATGGGTCACGTGTTGTTATTACATAGTGGCGTTAACCCGTTCAAATGTGACGTTTGTTTCAAAGGATTCAATCTCAGAACCGATTTGACCCGGCATTTGTCGGTACATAGCGGTATAAAACCGTTCAAATGCAATTTATGTGATAAAGAATTCCGACAGAAATCGAATTTAACGATTCACATGATTTCGCATAGCGACGTTAAACCGTTCAAATGCGATTCGTGTCCGAGCGAATTTAAACGGAAATCTCATTTAACCGATCACATTTTATCGCATAGCGATGTTAAACCGTTCAAATGCGATCAATGCGAAAAAGAATTTAGACAGAAATCTAATTTAACCGCTCACATGGTTTTACATAGCGACGTTAAACCGTTCAAATGCGATCGTTGTCAAAGTGAATTTAAACGGAAATCTTATTTAACCGAACATATGTTATCGCATACTATCGCTAAACCGTTTAAATGCGATATATGTCGGAAAGAATTCCGATTGAAACAGACTTTATCGTATCACATGTTAACACATACCGGTGCTAAGCGATTCAAATGTGATCTCTGTGAAAATGAATTTACGCAGAGAGGTCATCTTAAAGCTCACATGTTAACACATAGCGGTGTCAAACCGTTTAAATGCAATTTATGCGATAAAGAATTCGGACAGAAATCGAATTTAGCGACTCACATGATATCGCATAGCGATGCTAAGCCATTTAAATGTGATTTGTGCGATAATGAATTTAAACATAAATGTCATTTAACCGAACACATGTTATTACATATCGGTGTTAAACCATTCAAGTGCGGTCTTTGTACGAATGTATACTCACAAAAACGTTCGCTAAACAAACACATGTTGACGCATAGTCAGAGTTAA
- Protein Sequence
- MFQEIEQEDDLRPVEDNTWASDPLENNFIKTEKDSGDCEEVDVNVEKSNGQLLYTNRDYSDHEGSVCSATHVIKSSDSKLNSRSTQMVLHSSAKPFKCDICEKEFLCKSRLDSHIFTHTGARPFKCDICEKEFNRKDSLSRHMFIHGDTKRFKCDVCQKEFTLKGTLSIHMLTHVGDKPYTCDLCDKRFRWSKNLTNHMLLHSGKSFKCDFCEKEFPFKSRLMGHVLLLHSGVNPFKCDVCFKGFNLRTDLTRHLSVHSGIKPFKCNLCDKEFRQKSNLTIHMISHSDVKPFKCDSCPSEFKRKSHLTDHILSHSDVKPFKCDQCEKEFRQKSNLTAHMVLHSDVKPFKCDRCQSEFKRKSYLTEHMLSHTIAKPFKCDICRKEFRLKQTLSYHMLTHTGAKRFKCDLCENEFTQRGHLKAHMLTHSGVKPFKCNLCDKEFGQKSNLATHMISHSDAKPFKCDLCDNEFKHKCHLTEHMLLHIGVKPFKCGLCTNVYSQKRSLNKHMLTHSQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00283805;
- 90% Identity
- iTF_00283805;
- 80% Identity
- iTF_00283805;