Basic Information

Insect: Catonia carolina
Gene Symbol: -
Assembly: GCA_035578175.1
Location: JAQMRL010000042.1:441088-445440[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.1 1.7e+02 4.7 3.0 1 23 96 118 96 118 0.85

2 15 5.4e-07 8.5e-05 24.5 1.4 1 23 124 146 124 146 0.98

3 15 7.1e-06 0.0011 21.0 0.7 1 23 152 174 152 174 0.99

4 15 1.8e-05 0.0029 19.7 1.3 1 23 180 202 180 202 0.98

5 15 0.0042 0.66 12.3 0.6 1 23 207 230 207 230 0.94

6 15 7.6e-05 0.012 17.8 1.0 1 23 236 258 236 258 0.98

7 15 3e-08 4.7e-06 28.5 1.4 1 23 264 286 264 286 0.98

8 15 3.8e-05 0.0061 18.7 2.5 1 23 292 314 292 314 0.98

9 15 2.2e-07 3.6e-05 25.7 1.0 1 23 320 342 320 342 0.96

10 15 4.4e-05 0.0069 18.5 2.6 1 23 348 370 348 370 0.98

11 15 7.2e-05 0.011 17.8 2.3 1 23 376 398 376 398 0.99

12 15 6e-06 0.00095 21.2 1.8 1 23 404 426 404 426 0.99

13 15 2.5e-07 4e-05 25.6 0.6 1 23 432 454 432 454 0.98

14 15 0.0015 0.24 13.7 7.2 1 23 460 482 460 482 0.98

15 15 2.2e-05 0.0035 19.5 1.8 1 23 488 510 488 510 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.1	1.7e+02	4.7	3.0	1	23	96	118	96	118	0.85
2	15	5.4e-07	8.5e-05	24.5	1.4	1	23	124	146	124	146	0.98
3	15	7.1e-06	0.0011	21.0	0.7	1	23	152	174	152	174	0.99
4	15	1.8e-05	0.0029	19.7	1.3	1	23	180	202	180	202	0.98
5	15	0.0042	0.66	12.3	0.6	1	23	207	230	207	230	0.94
6	15	7.6e-05	0.012	17.8	1.0	1	23	236	258	236	258	0.98
7	15	3e-08	4.7e-06	28.5	1.4	1	23	264	286	264	286	0.98
8	15	3.8e-05	0.0061	18.7	2.5	1	23	292	314	292	314	0.98
9	15	2.2e-07	3.6e-05	25.7	1.0	1	23	320	342	320	342	0.96
10	15	4.4e-05	0.0069	18.5	2.6	1	23	348	370	348	370	0.98
11	15	7.2e-05	0.011	17.8	2.3	1	23	376	398	376	398	0.99
12	15	6e-06	0.00095	21.2	1.8	1	23	404	426	404	426	0.99
13	15	2.5e-07	4e-05	25.6	0.6	1	23	432	454	432	454	0.98
14	15	0.0015	0.24	13.7	7.2	1	23	460	482	460	482	0.98
15	15	2.2e-05	0.0035	19.5	1.8	1	23	488	510	488	510	0.99

Sequence Information

Coding Sequence: ATGTTTCAGGAAATTGAACAGGAAGATGATTTGAGGCCAGTTGAAGACAACACCTGGGCATCTGATCCTCtggaaaataatttcattaaaacagaaaagGATTCAGGCGATTGTGAAGAGGTAGATGTTAATGTGGAAAAATCAAATGGGCAACTGTTGTATACGAATAGAGACTATAGTGATCATGAAGGCAGTGTATGTAGTGCAACACATGTTATCAAAAGTAGCGATTCTAAATTAAACAGCCGGTCGACGCAGATGGTACTTCATAGTAGTGCTAAGCCATTCAAATGCGATATCTGTGAAAAAGAATTTCTGTGTAAAAGTCGTTTGGACAGTCACATATTTACGCATACGGGTGCGAGGCCATTCAAATGCGATATTTGCGAAAAAGAATTCAATCGCAAAGACAGTCTGTCTCGGCACATGTTTATACATGGCGATACTAAGCGATTTAAGTGTGATGTATGTCAGAAAGAATTCACGTTGAAGGGAACGCTATCGATTCATATGTTAACACATGTTGGCGATAAACCGTACACGTGCGATCTATGCGATAAACGATTCCGTTGGAGTAAAAATCTAACGAATCACATGTTGTTACATAGCGGTAAATCGTTTAAATGCGATTTCTGCGAAAAAGAATTTCCATTTAAAAGTCGTCTAATGGGTCACGTGTTGTTATTACATAGTGGCGTTAACCCGTTCAAATGTGACGTTTGTTTCAAAGGATTCAATCTCAGAACCGATTTGACCCGGCATTTGTCGGTACATAGCGGTATAAAACCGTTCAAATGCAATTTATGTGATAAAGAATTCCGACAGAAATCGAATTTAACGATTCACATGATTTCGCATAGCGACGTTAAACCGTTCAAATGCGATTCGTGTCCGAGCGAATTTAAACGGAAATCTCATTTAACCGATCACATTTTATCGCATAGCGATGTTAAACCGTTCAAATGCGATCAATGCGAAAAAGAATTTAGACAGAAATCTAATTTAACCGCTCACATGGTTTTACATAGCGACGTTAAACCGTTCAAATGCGATCGTTGTCAAAGTGAATTTAAACGGAAATCTTATTTAACCGAACATATGTTATCGCATACTATCGCTAAACCGTTTAAATGCGATATATGTCGGAAAGAATTCCGATTGAAACAGACTTTATCGTATCACATGTTAACACATACCGGTGCTAAGCGATTCAAATGTGATCTCTGTGAAAATGAATTTACGCAGAGAGGTCATCTTAAAGCTCACATGTTAACACATAGCGGTGTCAAACCGTTTAAATGCAATTTATGCGATAAAGAATTCGGACAGAAATCGAATTTAGCGACTCACATGATATCGCATAGCGATGCTAAGCCATTTAAATGTGATTTGTGCGATAATGAATTTAAACATAAATGTCATTTAACCGAACACATGTTATTACATATCGGTGTTAAACCATTCAAGTGCGGTCTTTGTACGAATGTATACTCACAAAAACGTTCGCTAAACAAACACATGTTGACGCATAGTCAGAGTTAA
Protein Sequence: MFQEIEQEDDLRPVEDNTWASDPLENNFIKTEKDSGDCEEVDVNVEKSNGQLLYTNRDYSDHEGSVCSATHVIKSSDSKLNSRSTQMVLHSSAKPFKCDICEKEFLCKSRLDSHIFTHTGARPFKCDICEKEFNRKDSLSRHMFIHGDTKRFKCDVCQKEFTLKGTLSIHMLTHVGDKPYTCDLCDKRFRWSKNLTNHMLLHSGKSFKCDFCEKEFPFKSRLMGHVLLLHSGVNPFKCDVCFKGFNLRTDLTRHLSVHSGIKPFKCNLCDKEFRQKSNLTIHMISHSDVKPFKCDSCPSEFKRKSHLTDHILSHSDVKPFKCDQCEKEFRQKSNLTAHMVLHSDVKPFKCDRCQSEFKRKSYLTEHMLSHTIAKPFKCDICRKEFRLKQTLSYHMLTHTGAKRFKCDLCENEFTQRGHLKAHMLTHSGVKPFKCNLCDKEFGQKSNLATHMISHSDAKPFKCDLCDNEFKHKCHLTEHMLLHIGVKPFKCGLCTNVYSQKRSLNKHMLTHSQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00284189;
90% Identity: iTF_00284189;
80% Identity: iTF_00284189;