Ccar011384.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- PRDM13
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000001.1:194662188-194664257[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.36 2.6e+03 0.4 0.4 8 43 157 193 152 202 0.66 2 12 0.38 2.7e+03 0.4 0.1 21 44 199 222 193 232 0.84 3 12 1.1 7.7e+03 -1.1 0.1 26 45 233 252 223 256 0.85 4 12 5.6e-06 0.04 15.8 0.0 20 52 255 287 238 289 0.85 5 12 0.3 2.2e+03 0.7 0.0 21 36 284 299 282 308 0.77 6 12 0.29 2e+03 0.7 0.0 21 46 368 394 365 400 0.74 7 12 0.025 1.8e+02 4.1 0.9 21 49 397 425 393 428 0.88 8 12 0.34 2.4e+03 0.5 0.1 26 46 441 461 439 466 0.87 9 12 0.081 5.7e+02 2.5 0.1 22 47 465 490 460 495 0.84 10 12 0.00035 2.5 10.1 0.0 21 48 492 519 488 523 0.86 11 12 8e-05 0.57 12.1 0.0 21 48 520 547 516 551 0.86 12 12 0.00011 0.8 11.7 0.3 21 46 548 573 544 578 0.91
Sequence Information
- Coding Sequence
- ATGGCTGACGAAAATACAGACGAAGTAGGCTCTTCAAGTGGAACAATCTCACGAGTCTGCAAGTATTGTCGACAGGATACAATTAAGAGTCAGAACATTGACGGAATCAATGACTATTGTGCAAAGTGTGAAACGAAATTACGTGAAGAAAGGCGGAAATCGTGGTTAACGAAAATGGAACTGCTGTACCGTTCGTGTTCAACTTGTCTGAATAAATTTAACGATAATCGTTCGTATGAACAACATGATTGTACTTTGGAGGATACATTCGTTTGCGATGGTTGCGGCAGAATATTcattaaaaaggaaaatattataGTCCACATacagaaatgtaaaaaaataatttcaaaaatgaatgatAGTTTTAGAAATAATTGGAGAATAGAATCAAAgtctgaaataaaaatagaaaattgtgaGCGTAATGTTAGATTAGATGAAAGTGGAAATGTACACAAGATGGCTGAACCAGCTGGTACTGAGATTGGTCAATCAGAATTACCCAAATCACGTAAACGTTTTAGTTGTGACATTTGTGGGAAGTGTTATAGTCGTAGATACACTTTGACAGTTCATTTACGTACACATACAAGAGAGAAACCTTTTAAGTGTAACGTTTGCAACGAAATGTTTCCATCCTCTTCTAAATTAAATACTCATGCTGCGCGTATACATGCGGGAGATAAATCGTTGATTTGTACTATCTGCAATAAAACATTTACCCATCCTCGTATTTTAAATCAACATATGCGTGttcatacaggagaaaaaccattcactTGTAATATCTGTAACAAAACGTATAGGTGGTCAGGTAATTTAAAAGACCATATGCGTTtgcatacaggagaaaaaccgttCGCTTGTAATATCTGCAATGAAACATTTAGGCTGTTGTATATGTTGAAAGATCATAAAATACAAGTGCATACGGATGAGGAACTGTTCAATTATGGTCTATGCAATAAGAAATTTAAAGTGTCTTCTGATTTAAATAAACACATGCTTTTTCATAAAAGAGATGAGTTAAATTGTAATGTGTgcaacagaaaatttaaacgccTTTCTCATGTAAAAAGACACATGCTCGTGCATACTGGAGAGAAACCGTTCAATTGCGAGATCTGCAACAAAAAATTTACACAgtGGTCTTCAAAATTAAATGATCATATGCGTGTGCATACAGGTGAGAAACCTTACAGTTGTAATATCTGCAACAAAAAGTTTGCACGATCTTCTGCTGTTCGTGTACACAAAATTCGTAGACACTGTTCTGATTCTCTAAATGATCACACGCGTGTGCATACAGGAGAGTTCAATTGCAATATATGCAACAAAACGTTTAAGCACTCTTATGCATTAAGTGatcatttgcgtgtgcatacagTAGAAAAACGATTCACTTGTAATACCTGCAACAAAATGTTTAGGTTGTCTTCGACTTTAAATTATCATATGCGTGTGCATACAGGTGAGAAACCTTTCAGTTGTAATGTCTGCAACAAAATGTTTAGGATGTCTTGGAATTTAAATGAACATATGCGTGTGCACACAGGTGAGAAACCTTTCAGTTGTAATATATGCAACAAAATGTTTAGGATGTCTTCGAATTTAAATGAACATATGCGTGTGCACACAGGTGAGAAACCTTACAGTTGTAATATCTGCAACAAAACGTTTTCACGATCTAATAGTCTTCGTAGACACATGCATGTACACACAGGAGAGAAAGTATCCAAATAA
- Protein Sequence
- MADENTDEVGSSSGTISRVCKYCRQDTIKSQNIDGINDYCAKCETKLREERRKSWLTKMELLYRSCSTCLNKFNDNRSYEQHDCTLEDTFVCDGCGRIFIKKENIIVHIQKCKKIISKMNDSFRNNWRIESKSEIKIENCERNVRLDESGNVHKMAEPAGTEIGQSELPKSRKRFSCDICGKCYSRRYTLTVHLRTHTREKPFKCNVCNEMFPSSSKLNTHAARIHAGDKSLICTICNKTFTHPRILNQHMRVHTGEKPFTCNICNKTYRWSGNLKDHMRLHTGEKPFACNICNETFRLLYMLKDHKIQVHTDEELFNYGLCNKKFKVSSDLNKHMLFHKRDELNCNVCNRKFKRLSHVKRHMLVHTGEKPFNCEICNKKFTQWSSKLNDHMRVHTGEKPYSCNICNKKFARSSAVRVHKIRRHCSDSLNDHTRVHTGEFNCNICNKTFKHSYALSDHLRVHTVEKRFTCNTCNKMFRLSSTLNYHMRVHTGEKPFSCNVCNKMFRMSWNLNEHMRVHTGEKPFSCNICNKMFRMSSNLNEHMRVHTGEKPYSCNICNKTFSRSNSLRRHMHVHTGEKVSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00283800;
- 90% Identity
- iTF_00283800;
- 80% Identity
- iTF_00283800;