Basic Information

Gene Symbol
PRDM13
Assembly
GCA_035578175.1
Location
JAQMRL010000001.1:194662188-194664257[-]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.36 2.6e+03 0.4 0.4 8 43 157 193 152 202 0.66
2 12 0.38 2.7e+03 0.4 0.1 21 44 199 222 193 232 0.84
3 12 1.1 7.7e+03 -1.1 0.1 26 45 233 252 223 256 0.85
4 12 5.6e-06 0.04 15.8 0.0 20 52 255 287 238 289 0.85
5 12 0.3 2.2e+03 0.7 0.0 21 36 284 299 282 308 0.77
6 12 0.29 2e+03 0.7 0.0 21 46 368 394 365 400 0.74
7 12 0.025 1.8e+02 4.1 0.9 21 49 397 425 393 428 0.88
8 12 0.34 2.4e+03 0.5 0.1 26 46 441 461 439 466 0.87
9 12 0.081 5.7e+02 2.5 0.1 22 47 465 490 460 495 0.84
10 12 0.00035 2.5 10.1 0.0 21 48 492 519 488 523 0.86
11 12 8e-05 0.57 12.1 0.0 21 48 520 547 516 551 0.86
12 12 0.00011 0.8 11.7 0.3 21 46 548 573 544 578 0.91

Sequence Information

Coding Sequence
ATGGCTGACGAAAATACAGACGAAGTAGGCTCTTCAAGTGGAACAATCTCACGAGTCTGCAAGTATTGTCGACAGGATACAATTAAGAGTCAGAACATTGACGGAATCAATGACTATTGTGCAAAGTGTGAAACGAAATTACGTGAAGAAAGGCGGAAATCGTGGTTAACGAAAATGGAACTGCTGTACCGTTCGTGTTCAACTTGTCTGAATAAATTTAACGATAATCGTTCGTATGAACAACATGATTGTACTTTGGAGGATACATTCGTTTGCGATGGTTGCGGCAGAATATTcattaaaaaggaaaatattataGTCCACATacagaaatgtaaaaaaataatttcaaaaatgaatgatAGTTTTAGAAATAATTGGAGAATAGAATCAAAgtctgaaataaaaatagaaaattgtgaGCGTAATGTTAGATTAGATGAAAGTGGAAATGTACACAAGATGGCTGAACCAGCTGGTACTGAGATTGGTCAATCAGAATTACCCAAATCACGTAAACGTTTTAGTTGTGACATTTGTGGGAAGTGTTATAGTCGTAGATACACTTTGACAGTTCATTTACGTACACATACAAGAGAGAAACCTTTTAAGTGTAACGTTTGCAACGAAATGTTTCCATCCTCTTCTAAATTAAATACTCATGCTGCGCGTATACATGCGGGAGATAAATCGTTGATTTGTACTATCTGCAATAAAACATTTACCCATCCTCGTATTTTAAATCAACATATGCGTGttcatacaggagaaaaaccattcactTGTAATATCTGTAACAAAACGTATAGGTGGTCAGGTAATTTAAAAGACCATATGCGTTtgcatacaggagaaaaaccgttCGCTTGTAATATCTGCAATGAAACATTTAGGCTGTTGTATATGTTGAAAGATCATAAAATACAAGTGCATACGGATGAGGAACTGTTCAATTATGGTCTATGCAATAAGAAATTTAAAGTGTCTTCTGATTTAAATAAACACATGCTTTTTCATAAAAGAGATGAGTTAAATTGTAATGTGTgcaacagaaaatttaaacgccTTTCTCATGTAAAAAGACACATGCTCGTGCATACTGGAGAGAAACCGTTCAATTGCGAGATCTGCAACAAAAAATTTACACAgtGGTCTTCAAAATTAAATGATCATATGCGTGTGCATACAGGTGAGAAACCTTACAGTTGTAATATCTGCAACAAAAAGTTTGCACGATCTTCTGCTGTTCGTGTACACAAAATTCGTAGACACTGTTCTGATTCTCTAAATGATCACACGCGTGTGCATACAGGAGAGTTCAATTGCAATATATGCAACAAAACGTTTAAGCACTCTTATGCATTAAGTGatcatttgcgtgtgcatacagTAGAAAAACGATTCACTTGTAATACCTGCAACAAAATGTTTAGGTTGTCTTCGACTTTAAATTATCATATGCGTGTGCATACAGGTGAGAAACCTTTCAGTTGTAATGTCTGCAACAAAATGTTTAGGATGTCTTGGAATTTAAATGAACATATGCGTGTGCACACAGGTGAGAAACCTTTCAGTTGTAATATATGCAACAAAATGTTTAGGATGTCTTCGAATTTAAATGAACATATGCGTGTGCACACAGGTGAGAAACCTTACAGTTGTAATATCTGCAACAAAACGTTTTCACGATCTAATAGTCTTCGTAGACACATGCATGTACACACAGGAGAGAAAGTATCCAAATAA
Protein Sequence
MADENTDEVGSSSGTISRVCKYCRQDTIKSQNIDGINDYCAKCETKLREERRKSWLTKMELLYRSCSTCLNKFNDNRSYEQHDCTLEDTFVCDGCGRIFIKKENIIVHIQKCKKIISKMNDSFRNNWRIESKSEIKIENCERNVRLDESGNVHKMAEPAGTEIGQSELPKSRKRFSCDICGKCYSRRYTLTVHLRTHTREKPFKCNVCNEMFPSSSKLNTHAARIHAGDKSLICTICNKTFTHPRILNQHMRVHTGEKPFTCNICNKTYRWSGNLKDHMRLHTGEKPFACNICNETFRLLYMLKDHKIQVHTDEELFNYGLCNKKFKVSSDLNKHMLFHKRDELNCNVCNRKFKRLSHVKRHMLVHTGEKPFNCEICNKKFTQWSSKLNDHMRVHTGEKPYSCNICNKKFARSSAVRVHKIRRHCSDSLNDHTRVHTGEFNCNICNKTFKHSYALSDHLRVHTVEKRFTCNTCNKMFRLSSTLNYHMRVHTGEKPFSCNVCNKMFRMSWNLNEHMRVHTGEKPFSCNICNKMFRMSSNLNEHMRVHTGEKPYSCNICNKTFSRSNSLRRHMHVHTGEKVSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00283800;
90% Identity
iTF_00283800;
80% Identity
iTF_00283800;