Basic Information

Insect: Catonia carolina
Gene Symbol: PRDM13
Assembly: GCA_035578175.1
Location: JAQMRL010000001.1:194662188-194664257[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 7.4 1.2e+03 2.1 1.2 3 19 66 82 65 82 0.95

2 16 0.00041 0.066 15.4 0.0 1 21 90 110 90 111 0.95

3 16 1.8e-07 2.9e-05 26.0 3.5 1 23 175 197 175 197 0.98

4 16 2.5e-05 0.004 19.3 0.3 1 23 203 226 203 226 0.95

5 16 1.6e-05 0.0025 19.9 1.5 2 23 233 254 232 254 0.96

6 16 7.5e-06 0.0012 20.9 1.1 1 23 260 282 260 282 0.98

7 16 0.0012 0.18 14.0 0.4 1 23 288 311 288 311 0.92

8 16 0.00033 0.052 15.8 0.5 6 23 322 339 320 339 0.94

9 16 1.2e-05 0.0019 20.3 3.3 2 23 345 366 344 366 0.96

10 16 0.00027 0.043 16.0 2.0 1 23 372 395 372 395 0.90

11 16 2.3e-05 0.0037 19.4 0.9 1 23 401 424 401 424 0.96

12 16 1.4e-06 0.00022 23.2 2.8 1 23 440 462 440 462 0.98

13 16 2.1e-06 0.00034 22.6 2.6 1 23 468 490 468 490 0.98

14 16 3.7e-07 5.8e-05 25.1 0.8 1 23 496 518 496 518 0.98

15 16 4.5e-08 7.1e-06 27.9 1.2 1 23 524 546 524 546 0.98

16 16 1.5e-07 2.3e-05 26.3 4.1 1 23 552 574 552 574 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	7.4	1.2e+03	2.1	1.2	3	19	66	82	65	82	0.95
2	16	0.00041	0.066	15.4	0.0	1	21	90	110	90	111	0.95
3	16	1.8e-07	2.9e-05	26.0	3.5	1	23	175	197	175	197	0.98
4	16	2.5e-05	0.004	19.3	0.3	1	23	203	226	203	226	0.95
5	16	1.6e-05	0.0025	19.9	1.5	2	23	233	254	232	254	0.96
6	16	7.5e-06	0.0012	20.9	1.1	1	23	260	282	260	282	0.98
7	16	0.0012	0.18	14.0	0.4	1	23	288	311	288	311	0.92
8	16	0.00033	0.052	15.8	0.5	6	23	322	339	320	339	0.94
9	16	1.2e-05	0.0019	20.3	3.3	2	23	345	366	344	366	0.96
10	16	0.00027	0.043	16.0	2.0	1	23	372	395	372	395	0.90
11	16	2.3e-05	0.0037	19.4	0.9	1	23	401	424	401	424	0.96
12	16	1.4e-06	0.00022	23.2	2.8	1	23	440	462	440	462	0.98
13	16	2.1e-06	0.00034	22.6	2.6	1	23	468	490	468	490	0.98
14	16	3.7e-07	5.8e-05	25.1	0.8	1	23	496	518	496	518	0.98
15	16	4.5e-08	7.1e-06	27.9	1.2	1	23	524	546	524	546	0.98
16	16	1.5e-07	2.3e-05	26.3	4.1	1	23	552	574	552	574	0.98

Sequence Information

Coding Sequence: ATGGCTGACGAAAATACAGACGAAGTAGGCTCTTCAAGTGGAACAATCTCACGAGTCTGCAAGTATTGTCGACAGGATACAATTAAGAGTCAGAACATTGACGGAATCAATGACTATTGTGCAAAGTGTGAAACGAAATTACGTGAAGAAAGGCGGAAATCGTGGTTAACGAAAATGGAACTGCTGTACCGTTCGTGTTCAACTTGTCTGAATAAATTTAACGATAATCGTTCGTATGAACAACATGATTGTACTTTGGAGGATACATTCGTTTGCGATGGTTGCGGCAGAATATTcattaaaaaggaaaatattataGTCCACATacagaaatgtaaaaaaataatttcaaaaatgaatgatAGTTTTAGAAATAATTGGAGAATAGAATCAAAgtctgaaataaaaatagaaaattgtgaGCGTAATGTTAGATTAGATGAAAGTGGAAATGTACACAAGATGGCTGAACCAGCTGGTACTGAGATTGGTCAATCAGAATTACCCAAATCACGTAAACGTTTTAGTTGTGACATTTGTGGGAAGTGTTATAGTCGTAGATACACTTTGACAGTTCATTTACGTACACATACAAGAGAGAAACCTTTTAAGTGTAACGTTTGCAACGAAATGTTTCCATCCTCTTCTAAATTAAATACTCATGCTGCGCGTATACATGCGGGAGATAAATCGTTGATTTGTACTATCTGCAATAAAACATTTACCCATCCTCGTATTTTAAATCAACATATGCGTGttcatacaggagaaaaaccattcactTGTAATATCTGTAACAAAACGTATAGGTGGTCAGGTAATTTAAAAGACCATATGCGTTtgcatacaggagaaaaaccgttCGCTTGTAATATCTGCAATGAAACATTTAGGCTGTTGTATATGTTGAAAGATCATAAAATACAAGTGCATACGGATGAGGAACTGTTCAATTATGGTCTATGCAATAAGAAATTTAAAGTGTCTTCTGATTTAAATAAACACATGCTTTTTCATAAAAGAGATGAGTTAAATTGTAATGTGTgcaacagaaaatttaaacgccTTTCTCATGTAAAAAGACACATGCTCGTGCATACTGGAGAGAAACCGTTCAATTGCGAGATCTGCAACAAAAAATTTACACAgtGGTCTTCAAAATTAAATGATCATATGCGTGTGCATACAGGTGAGAAACCTTACAGTTGTAATATCTGCAACAAAAAGTTTGCACGATCTTCTGCTGTTCGTGTACACAAAATTCGTAGACACTGTTCTGATTCTCTAAATGATCACACGCGTGTGCATACAGGAGAGTTCAATTGCAATATATGCAACAAAACGTTTAAGCACTCTTATGCATTAAGTGatcatttgcgtgtgcatacagTAGAAAAACGATTCACTTGTAATACCTGCAACAAAATGTTTAGGTTGTCTTCGACTTTAAATTATCATATGCGTGTGCATACAGGTGAGAAACCTTTCAGTTGTAATGTCTGCAACAAAATGTTTAGGATGTCTTGGAATTTAAATGAACATATGCGTGTGCACACAGGTGAGAAACCTTTCAGTTGTAATATATGCAACAAAATGTTTAGGATGTCTTCGAATTTAAATGAACATATGCGTGTGCACACAGGTGAGAAACCTTACAGTTGTAATATCTGCAACAAAACGTTTTCACGATCTAATAGTCTTCGTAGACACATGCATGTACACACAGGAGAGAAAGTATCCAAATAA
Protein Sequence: MADENTDEVGSSSGTISRVCKYCRQDTIKSQNIDGINDYCAKCETKLREERRKSWLTKMELLYRSCSTCLNKFNDNRSYEQHDCTLEDTFVCDGCGRIFIKKENIIVHIQKCKKIISKMNDSFRNNWRIESKSEIKIENCERNVRLDESGNVHKMAEPAGTEIGQSELPKSRKRFSCDICGKCYSRRYTLTVHLRTHTREKPFKCNVCNEMFPSSSKLNTHAARIHAGDKSLICTICNKTFTHPRILNQHMRVHTGEKPFTCNICNKTYRWSGNLKDHMRLHTGEKPFACNICNETFRLLYMLKDHKIQVHTDEELFNYGLCNKKFKVSSDLNKHMLFHKRDELNCNVCNRKFKRLSHVKRHMLVHTGEKPFNCEICNKKFTQWSSKLNDHMRVHTGEKPYSCNICNKKFARSSAVRVHKIRRHCSDSLNDHTRVHTGEFNCNICNKTFKHSYALSDHLRVHTVEKRFTCNTCNKMFRLSSTLNYHMRVHTGEKPFSCNVCNKMFRMSWNLNEHMRVHTGEKPFSCNICNKMFRMSSNLNEHMRVHTGEKPYSCNICNKTFSRSNSLRRHMHVHTGEKVSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00284184;
90% Identity: iTF_00284184;
80% Identity: iTF_00284184;