Ccar028854.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- SMARCC2
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000003.1:84928354-84965133[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-14 4.2e-11 44.6 0.2 3 44 459 500 457 502 0.95 2 2 6.7 2.3e+04 -2.6 0.0 23 40 562 580 560 580 0.89
Sequence Information
- Coding Sequence
- ATGCCGGTCGTTTACATAAGGCCCGATGTGGATAAAGGCGTCATTACCAAAGTTAAGGATATTATAAAAAGACATCAGGGAACAGTTTGTGACACGGAAGAGGAAGCAACTCACATAATATATCCAGTTGTGGATCCATTGGATGAAGAATACGCTCGGCCAGCATTCAGAAGAGACCGCATGGTGATGATGCATTGGTATTACTTCCCTGACTCTTACGATTCATGGGTGAGCACAGAACTACCGGTTGATCCACCTGATTCACCTGCGCCTCATACACCTCCGTGGAGGGTGAGTGCATCATGGGTTTTGGAGTCTGACCAATACAATGAATGGATGAATGAAGAAGATTATGAAGTAGATGAGACTggaaagaaaaaagttcataggTTGCGATTGACAGTTGAGGATCTTATGAGCCAGTCTGATCCGGACAGAtcaaaaaagaaacagaaacggAAACGATCGCCATCTCCTCCTGTCAAAATGGGGAAACGGAAGAGTGGTCGCAGTCCAGCAGTGGTGAGCAATCAGCCAAAGAAGGTGAAGAGTGAGGAGGAGGCGGATGATCTGACAAGGGATATGGAGGAGCCGACACCTGAACCAAATGTTCAAGAAGTTACTGTTCCCAAGCCGGGATGTTCATCTTCAAAGAAGGATAGTGATACTCAGCCAATTAAGAGCGGTACAGTGACTGATTTGGATGAAGAAATGGATCGCGATCGTGATGATAGCCAAACCGGAAAAATGTCTGACACTACAACACAGGACCAGGACGTAACGAGCAAGGACGATGGGCAAGAAGACAACGTAACGGAACAGACGCACCACATCATCATTCCAAGTTACAGCGCTTGGTTCGATTATAATTCGATTCACACAATAGAAAAAAGAGCATTACCGGAATTCTTCAATGGTAAAAATAAGTCGAAAACACCAGAGATTTATTTGGCGTACAGAAATTTCATGATCGACACATATCGGCTTAATCCGACTGAGTATATTACAAGCACTGCTTCCAGACGAAATTTGGCCGGCGATGTTTGTGCTATTATGAGGGTGCATGCTTTTCTCGAACAATGGGGACTTATCAATTATCAGgtgGATGCTGACAGCCGTCCTACCCCAATGGGTCCGCCTCCAACCTCGCACTTTCACGTTTTGTCCGATACACCATCTGGTCTGCAACCAGTTAATCCTCCAAAGACTCCTCAACCGTCAGCTGCGAAAACACTTCTTGATATGGAAAAGAAAATTGACACGACACCAAAGAAAGCTGAAGCAGATCCTGGTTCTAATTTTGGATTGAAATTAGATCAGTACAGCAGGAAACCAGCCGCATTACGTAACAAGACCGCAGCTAGCATGACACGAGATTGGACTGAACAGGAGACACTTCTACTATTGGAAGGTCTTGAATTGTATAAAGATGATTGGAATAAAGTCTGTGAACATGTCGGTAGTCGCACTCAAGATGAATGTATATTGCATTTCTTGCGGTTACCTATTGAAGATCCATATCTGGAGGATCATGAAGCTGGTGGTGGTGCGTTAGGTCCGTTAGCGTACCAGCCAATTCCATTCAGCAAAGCTGGAAATCCAATTATGTCAACGGTTGCGTTTTTAGCATCAGTGGTGGATCCCAGAGTTGCTGCTTCAGCTGCAAAGGCAGCAATGGAGGAATTTGCTAAAATTAAGGATGAAGTACCAGCAGCATTGATGGATGCCCACATCAAGAATGTCGAGGCTTCGACTACAGATGGCAAATTTGACCCATCAGCCGgattaatacagAGTGGTATTGCTGGCACTGACCCAGAAAAGGAAGAACAGGGTGAAAACCGAGagaaaaaggaagaagaagaaagtacGGCGAACAAAGAAGGTGAAACTAATAAAGAAGCACCAACTGAAGAGGTggctattaaaaaagaaattcctGATAAAGATACTGCTGAACCTGGTACACCAGCTGAACCGATGGAGGTTGATAAGAAGGAGGGTGAGACTGGGGAAGCTACACCAGCAGCAGCAACTGCTACAACAAATGGAGAAGTAAAGCAGGAAGCAGTTGATACAAGAACACCGGTAATTAAGGATGGCCAACTTCAGTCGGCTGCAGCTGCGGCTCTCGCAGCAGCTGCTGTTAAGGCGAAACATCTTGCGGCAGTCGAAGAAAGGAAAATTAAATCATTGGTTGCACTTTTAGTAGAAACTCAGATGAAAAAATTGGAAATTAAACTGAGACACTTTGAGGAATTGGAAACGACGATGGAACGAGAACGAGAAGGTCTGGAATATCAACGACAACAACTCATTCAGGAACGACAACAATTCCATCTGGAACAATTAAAAGCCGCGGAGTTCAGAGCCAGGCAACAGGCTCATCAACGGTTAGCCGCTGAACAACAGCAGACCCCTTCAACCACTCCGACTCCTCCATCTCCGCAAGCAGTACCTACTCCTCATCAACCAGCTACATCGCCTTCGCCTGCCTGA
- Protein Sequence
- MPVVYIRPDVDKGVITKVKDIIKRHQGTVCDTEEEATHIIYPVVDPLDEEYARPAFRRDRMVMMHWYYFPDSYDSWVSTELPVDPPDSPAPHTPPWRVSASWVLESDQYNEWMNEEDYEVDETGKKKVHRLRLTVEDLMSQSDPDRSKKKQKRKRSPSPPVKMGKRKSGRSPAVVSNQPKKVKSEEEADDLTRDMEEPTPEPNVQEVTVPKPGCSSSKKDSDTQPIKSGTVTDLDEEMDRDRDDSQTGKMSDTTTQDQDVTSKDDGQEDNVTEQTHHIIIPSYSAWFDYNSIHTIEKRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYITSTASRRNLAGDVCAIMRVHAFLEQWGLINYQVDADSRPTPMGPPPTSHFHVLSDTPSGLQPVNPPKTPQPSAAKTLLDMEKKIDTTPKKAEADPGSNFGLKLDQYSRKPAALRNKTAASMTRDWTEQETLLLLEGLELYKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEDHEAGGGALGPLAYQPIPFSKAGNPIMSTVAFLASVVDPRVAASAAKAAMEEFAKIKDEVPAALMDAHIKNVEASTTDGKFDPSAGLIQSGIAGTDPEKEEQGENREKKEEEESTANKEGETNKEAPTEEVAIKKEIPDKDTAEPGTPAEPMEVDKKEGETGEATPAAATATTNGEVKQEAVDTRTPVIKDGQLQSAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLIQERQQFHLEQLKAAEFRARQQAHQRLAAEQQQTPSTTPTPPSPQAVPTPHQPATSPSPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01353681; iTF_00365718; iTF_01059806;
- 90% Identity
- -
- 80% Identity
- -