Cspo042321.1
Basic Information
- Insect
- Catocala sponsa
- Gene Symbol
- -
- Assembly
- GCA_963564715.1
- Location
- OY751356.1:12126626-12128977[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 4.9e-06 0.00057 21.5 4.2 1 23 8 31 8 31 0.95 2 21 0.0034 0.4 12.6 0.3 3 23 38 59 36 59 0.95 3 21 3.6e-05 0.0042 18.8 0.3 2 23 68 90 68 90 0.97 4 21 1.6e-05 0.0018 19.9 2.7 2 23 99 121 98 121 0.95 5 21 1.8e-05 0.0021 19.8 3.0 2 23 129 151 129 151 0.97 6 21 7.5e-05 0.0088 17.8 2.4 2 23 160 182 159 182 0.95 7 21 1.6e-07 1.9e-05 26.2 1.2 1 23 188 211 188 211 0.98 8 21 0.0017 0.2 13.5 0.6 1 23 219 242 219 242 0.95 9 21 0.0062 0.73 11.7 0.5 2 23 256 278 255 278 0.95 10 21 4.1e-05 0.0049 18.6 1.0 1 23 304 327 304 327 0.97 11 21 0.3 35 6.5 0.5 2 21 335 354 334 355 0.93 12 21 0.021 2.4 10.1 2.2 2 23 364 386 364 386 0.95 13 21 0.0026 0.31 12.9 6.1 1 23 408 431 408 431 0.97 14 21 1.1e-05 0.0013 20.4 1.1 2 23 438 460 437 460 0.96 15 21 4.3e-05 0.0051 18.5 2.1 2 23 467 489 466 489 0.94 16 21 0.0086 1 11.3 2.2 1 23 495 518 495 518 0.97 17 21 0.27 31 6.6 4.8 2 23 526 548 526 548 0.95 18 21 2.4e-05 0.0028 19.3 0.8 1 23 555 578 555 578 0.98 19 21 0.2 24 7.0 1.8 1 20 585 604 585 608 0.84 20 21 0.044 5.2 9.1 2.8 5 23 625 644 622 644 0.90 21 21 4.6 5.3e+02 2.7 0.5 1 12 694 705 694 708 0.86
Sequence Information
- Coding Sequence
- atgtatcacAACCAACTGGATTTCGTATGCGATTACTGCTCAAGAACAtttacaagaaaatataatctGCAGACGCATATCGAAAACTGCCACATAAACTCTTCTAGCCATTGTGATATTTGTAGTCAGAGTTTTGGTAGTCCTGCGGGCTTGCAGCTCCATCTCACCAGAGGTCACAACAACTATGGACAACCATTCCCTGAGTGTGATTTGTGCGGACGAATCTTTACCAGAAAGCAAAACATCATGTCACATATGATAACCGTTCATCTACAAGGACTAGGTGATGAAATAAGATGTAGATTATGCGATAAAACATTTACTACTGAACGCAATTTAAAGAGGCATAGGAATCAACAGCATAATCCTAATGTAGAATATCCGACTTGCCACTACTGCAGTAAGGTTTTTAAAGGCAAACACTCTCTTATAGCTCACATACAAACTGTTCACACGTCGAGCGAGAAAGATGTTATAAAATGCCATTTATGCGAGAAAGTCTATACGAACACAAGGAATTTAAAACGTCACGTAGAAATGTTCCATGGCGAGAGAGGTGAATATCGTTGTGATATCTGCCCTAAAGTATATACATCTAATCAGAGTTTGAGGCGACATCTACGTACAACGCATAGTACAGACAGCCATGAGCAGTTTACCTGtagttattgtaataaagttatCATTGGTAAAGAAAATTTCGAGAGTCACATACAATTCAACCACCAGCAATCAGAAATGGAAGTTAAGATTGAGAATGATATTGTTTGTGAAACGTGCCACCAGAGTTATGATGAAGAAGTGCAGCTACGCCAGCATATTAAGTTACAACATTCATTTAAAGCATTTTACAAATACTGCAAAAAAGTTTTAGTTAAGCAATATGGAACTGAATacatcaataatatatataattgcgAGTATTGTCAGCACGCATTTCCTAGCGTTTATGAGCTGAAAGATCATATGAGAGTCAACCATGACACGGAGTATTCCCTATCTACTTGCAATGTGTGCTTTAACAAGTTTTACAGCAAGGAGACTATGATAGCTCACAAAAAAGTGTGTCTACCCCCACCTAACGTGAATTCCTGCAGTCATTGCGATAAACTCTTCACTGATATATCCAGTTTAGAGTTTCACACGAGAATATTTCATCCACAAGCTCAAATCGCCGACTCAAATATATCTTCGACGAATGTAGACGAAGAAATGTCTTGTTTTAAATGCGAGCATTGCGACCGCATGTATTACAGTGACCGTTCTTTGAAACATCACATCAAGCTAAAACACACATCGGATGAACAGGTACCATGCCACATTTGTGGAAAGATTTGCAGTAACAAGTACTACCTAGCATCTCATATCAAAATTGTTCATAACAACGACACCTGGTCCCGGTGCGAGTATTGCGACAAACAGTTCAAATCTAAGAGGAACATTCGACGCCATATTGAATACACGCATCTAGGAATGCAACGGTATAAGTGTATTGAATGCGAGACGTTGTTCAAAGAAAAACGGAGCTTAAGAAAACATGTTAGGACCAAGCATCCGAACTCGGCAGCGTTTCCACAATGTCACATATGCTACAAGCGTTTTGAGTCCGCCAAATCTTGTAAGATTCATCTTAAGCTTCTTCATTCTTTCAATATGAATACGTATCCGTGTCATCTCTGTTCCGTATCGTTCAGCTCAAACGAAGCGTTGACTATACATTTGAACACGAAACATTTGGCCGAAGATGAAATATACAAATGCGAGGAATGCAATGTTGTTTTCAAAGGACAAGAGCGTTTCGACAGTCACAATGAACTTTGTCATGTCAATCTAGTGCCCAATATAAAACAGAAGGTACTGCCCCGATGTATTCTCTGCATGAAAGATTTCAGCACCAGAAAGACTTTAAAACGCCACATCAAAAAATTCCACAATGATTTTGACGTTGATGAACTGGCTACATTCGGTTCTCGAAGAAGAACATTTACAGTTGATTGCGAGGAATGTGTTAAGAACTTTAATGACGAATTTCATCATAATGTTTATCAGAAGATAAAACACTTACGAGATTCGATTATATTCAAGTGTGAGATGTGTCATTCTTCTTATAATTCTTTGGAGTACGCTATTCAGAGGTACAAGCTGGCGAATGGAGAAGCTTGTAAGACCAAAACGATTCTAAGCGAGCTATGTACTACTGAGATGAGTGAGGAGGAAACTGAATTTTCTGGCTTCGGCTCCTTACATGAGTTGCCAGAGAGTACGACTAACGATATACAAATTAAGATGGAGCCGCTAGACCAGCTGATGGAATATGACGAAGATATCAAATCAGAACCTGTATCTCCTTGA
- Protein Sequence
- MYHNQLDFVCDYCSRTFTRKYNLQTHIENCHINSSSHCDICSQSFGSPAGLQLHLTRGHNNYGQPFPECDLCGRIFTRKQNIMSHMITVHLQGLGDEIRCRLCDKTFTTERNLKRHRNQQHNPNVEYPTCHYCSKVFKGKHSLIAHIQTVHTSSEKDVIKCHLCEKVYTNTRNLKRHVEMFHGERGEYRCDICPKVYTSNQSLRRHLRTTHSTDSHEQFTCSYCNKVIIGKENFESHIQFNHQQSEMEVKIENDIVCETCHQSYDEEVQLRQHIKLQHSFKAFYKYCKKVLVKQYGTEYINNIYNCEYCQHAFPSVYELKDHMRVNHDTEYSLSTCNVCFNKFYSKETMIAHKKVCLPPPNVNSCSHCDKLFTDISSLEFHTRIFHPQAQIADSNISSTNVDEEMSCFKCEHCDRMYYSDRSLKHHIKLKHTSDEQVPCHICGKICSNKYYLASHIKIVHNNDTWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSAAFPQCHICYKRFESAKSCKIHLKLLHSFNMNTYPCHLCSVSFSSNEALTIHLNTKHLAEDEIYKCEECNVVFKGQERFDSHNELCHVNLVPNIKQKVLPRCILCMKDFSTRKTLKRHIKKFHNDFDVDELATFGSRRRTFTVDCEECVKNFNDEFHHNVYQKIKHLRDSIIFKCEMCHSSYNSLEYAIQRYKLANGEACKTKTILSELCTTEMSEEETEFSGFGSLHELPESTTNDIQIKMEPLDQLMEYDEDIKSEPVSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00677880;
- 90% Identity
- iTF_00677880;
- 80% Identity
- iTF_00282630;