Cnup023980.1
Basic Information
- Insect
- Catocala nupta
- Gene Symbol
- TFDP1
- Assembly
- GCA_963675205.1
- Location
- OY776089.1:15724068-15752600[+]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9 3.7e+04 -3.7 0.0 22 38 127 147 117 152 0.59 2 2 2.8e-23 3.6e-19 70.0 0.1 2 65 171 250 170 250 0.97
Sequence Information
- Coding Sequence
- ATGTCTCAGACGAATAGTACTGTAAATTTTCTTATACATGACGCTAATGGGCAGCCACAAATGGTGAAAGTTGTTCAAAACACAAATAATCACTCAGTTGctcaaatcaaaattaaaccTAATCCTGTGAAAGTAATCAAACTCCCAGCTACATCTGAAGGAAACCTCAAGacACCTGTGTACAGGACAGTGAAGTTAACTGGCATTAAATGTGCATCAAaattgTTGCAGGTTCCTGTTGATACTCTAGCAAATATACAAAAAGTGAAACTCGAACCAAGGGAGGTCGAAGAACACCAGATAAGTCACGAACAGCTtactgaattaaaatatatacatcctCTGTCCGAACTTGTTACGCTACCGATTAAGTCTGAGAACCTAGTAACAAGTACTAGTACGGCGAATAACTTATCAACTATGTCACATGCCTCGAGAAGGAGACACGACTCTGACAATGACCCTCCAGCTGAATATACCACAAAGAGACGTAAGCATGCAGACAAAGTCGGTAAAGGCCTGAGACATTTCTCCATGAAAGTATGTGAAAAAGTGAGGAATAAAGGGTTCACTTCTTACAATGAGGTAGCAGATGAATTAGTGCTAGAATTTGCAGCTGGAATGCATGGTTCAGCAGATAGCCAGCAATATGATCAGAAAAATATACGCAGAAGAGTGTATGAtgcattaaatgttttaatggcaatgaatattatatcaaaagaaaagaaagaaatcagatGGCTTGGCCTACCCACAAATAGTGTACAAGAGTGTACAGCCttagaaaaagaaaagcaatCCAAGTTAGAACAGATACAAAAAAAGACTCAACAATTACAAGAATTAATATTACAGcacatttcatttaaaagttTGATAGAAAGAAATAAGGAGGCAGAAAGTAAAGGAGTAAAACCGTCGCCATCATCTGCAATCCATTTGCCATTTATTGTTGTGAATACTAGTGATAAAGCTTTAATTGACTGCAGTATTTCTAATGACAAGACAGAGTATATGTTCAATTTCAACAAAAGGTTCCAAATACATgatgatattgatatattaaaaagaatggGTCTCCTGTttgGTTTGGATAAAGGTGAATGTTCAGAAGAGGACATAGAACGAGCGAAAAGTATGGTtccaaaatctttaaaaacatatgtaGAACaAATGGGCAGAGGAGTCATAACAAAACTGTCGACTATGCTTGAAGAGGAGGATCTGGAAGAAGAAGCTGGTGAAGATGAAGAAGTATTAGAAGGAGAGGCAGAGATAGAGGACGAACAAGAAGAGGCTGAAGCCAACGACTATAGCGATGATAGCAGTGACGTGGACGTGTAG
- Protein Sequence
- MSQTNSTVNFLIHDANGQPQMVKVVQNTNNHSVAQIKIKPNPVKVIKLPATSEGNLKTPVYRTVKLTGIKCASKLLQVPVDTLANIQKVKLEPREVEEHQISHEQLTELKYIHPLSELVTLPIKSENLVTSTSTANNLSTMSHASRRRHDSDNDPPAEYTTKRRKHADKVGKGLRHFSMKVCEKVRNKGFTSYNEVADELVLEFAAGMHGSADSQQYDQKNIRRRVYDALNVLMAMNIISKEKKEIRWLGLPTNSVQECTALEKEKQSKLEQIQKKTQQLQELILQHISFKSLIERNKEAESKGVKPSPSSAIHLPFIVVNTSDKALIDCSISNDKTEYMFNFNKRFQIHDDIDILKRMGLLFGLDKGECSEEDIERAKSMVPKSLKTYVEQMGRGVITKLSTMLEEEDLEEEAGEDEEVLEGEAEIEDEQEEAEANDYSDDSSDVDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00784189;
- 90% Identity
- iTF_01197516; iTF_00282061; iTF_00404486; iTF_00636065; iTF_01166388; iTF_00637269; iTF_00908606; iTF_00823719; iTF_01360402; iTF_01151855; iTF_00869417; iTF_00706739; iTF_01491671; iTF_01501880; iTF_00156994; iTF_00441277;
- 80% Identity
- -