Cnig041734.1
Basic Information
- Insect
- Cataglyphis niger
- Gene Symbol
- -
- Assembly
- GCA_004329405.1
- Location
- SJPC01007512.1:4593-5203[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-12 2.7e-08 35.2 0.0 2 35 38 72 37 78 0.91
Sequence Information
- Coding Sequence
- atgCCTTGTCAAGGTCATATCAAGGTCATACGCGAAGCGCGATTTTCGCGCCATCTATCCTCTCTAGCTGACTATACGACCCTGCTGAAGCTGAAGGCACCCACGTGGACGCGACACGATCTCCAGGAGGCGATCGAGGCGGTGGTGACCCAGAAGATGCGCTTCACCCAGGCATCAACCAAATACGGCATCCCCAAGGGCACCCTTTACGACAACATCCTCGGCAAGTCCAAGAGGATGATGATACTCGAGGAGGCCGGTCTCGATCCGACCGAGGAAACGGCCGTGCTCGAGTTCTGCTGCGACATAAGCGTCAGTCCGTACAACCGGCGAACAAAAAAGTCCCTCAACGCGATATTGAATTTCGTCGAGCAGCTCAGGCAGAAGCGCGATCCCGCCTTCGTGTTCACCGGGTTGTCGGGCTTCCGTTGGTGGTGGGCCTTTTGCAAGAAGCACTCTATAGTCTCGCTCTATTTCAACGACGAGAACGAGAACGGGGCCGACTCCTCTTAA
- Protein Sequence
- MPCQGHIKVIREARFSRHLSSLADYTTLLKLKAPTWTRHDLQEAIEAVVTQKMRFTQASTKYGIPKGTLYDNILGKSKRMMILEEAGLDPTEETAVLEFCCDISVSPYNRRTKKSLNAILNFVEQLRQKRDPAFVFTGLSGFRWWWAFCKKHSIVSLYFNDENENGADSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00868036;
- 90% Identity
- iTF_01421468;
- 80% Identity
- iTF_00279886;