Cpal004236.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- Rreb1_2
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000045.1:1017287-1024156[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00013 0.83 9.9 0.6 21 45 224 248 202 251 0.92 2 8 0.00011 0.74 10.1 0.3 21 45 277 301 270 304 0.91 3 8 0.00011 0.74 10.1 0.3 21 45 330 354 323 357 0.91 4 8 0.00011 0.74 10.1 0.3 21 45 383 407 376 410 0.91 5 8 0.00011 0.74 10.1 0.3 21 45 436 460 429 463 0.91 6 8 9.9e-05 0.65 10.3 0.2 21 45 489 513 482 519 0.91 7 8 0.023 1.5e+02 2.7 6.6 5 51 540 585 536 586 0.75 8 8 0.0071 46 4.4 1.3 23 48 585 610 578 612 0.87
Sequence Information
- Coding Sequence
- ATGAATTCTCAAGTTTGTGTGAATTGTAACAATAAGAAACCTGTGAACTTGACTACGAATCGGCTGGTAACGGAGAGTTGTGGTCATGTGAAGTGTATGGATTGCCTTCTTCATGAGAAGGCTGGATGTGCGGTTTGTTTGAGAGAAAGCTGTGACCAGGAGTCTGGAGACGTCCAGCTGCCAGAGAGTGATGGTGACGAGCAGGTCAAGCTAAACGTTATCGAGGTTCCTGTTGAATTTACGACTGACTTAATAGAAAATCAGACTGATCTTGAAGACTTAAGTAAGAAGGTGAAGCCGGAGACTTCTCATGTTAGGATAGAGTCTGATGGTAATAGCCGATATTTTGTGTGCACTCTGTGCAAGAAGAAATTCCATGCCCGCAGCCAAGTAGCATACCATGCATACTGCAATGGCCAGAGGAAGCCATACCAGTGTCCTGATTGCAATAAGAGCTTTGCAGCTCTCTCACATTTCAAGTATCACATGAACGTGCATCGTAATGAGAGAACATACTCGTGCGAGGAGTGTGGCGACAGCTTCTTCCAGATGTCTAAACTGCAGAGACACAAGCTCAAGCACACCAAAGAGAAAAAGTACGCGTGCGTACAGTGCAGCAAGGCGTTCAACAACGTGTCGTCGCTGCGCAAGCACGCGCTCACGCACACGGAGGAGCGGCCGTACGCGTGCGCCGTGTGCGCGCGCCGCTTCCGCGACTCCTCCAACTACCGCAAGCACCTCGCCAAGCACGAAGGTTGGTCTGTTTGTATGGGCAGCAAGGCGTTCAACAACGTGTCGTCGCTGCGCAAGCACGCGCTCACGCACACGGAGGAGCGGCCGTACGCGTGCGCCGTGTGCGCGCGCCGCTTCCGCGACTCCTCCAACTACCGCAAGCACCTCGCCAAGCACGAAGGTTGGTCTGTTTGTATGGGCAGCAAGGCGTTCAACAACGTGTCGTCGCTGCGCAAGCACGCGCTCACGCACACGGAGGAGCGGCCGTACGCGTGCGCCGTGTGCGCGCGCCGCTTCCGCGACTCCTCCAACTACCGCAAGCACCTCGCCAAGCACGAAGGTTGGTCTGTTTGTATGGGCAGCAAGGCGTTCAACAACGTGTCGTCGCTGCGCAAGCACGCGCTCACGCACACGGAGGAGCGGCCGTACGCGTGCGCCGTGTGCGCGCGCCGCTTCCGCGACTCCTCCAACTACCGCAAGCACCTCGCCAAGCACGAAGGTTGGTCTGTTTGTATGGGCAGCAAGGCGTTCAACAACGTGTCGTCGCTGCGCAAGCACGCGCTCACGCACACGGAGGAGCGGCCGTACGCGTGCGCCGTGTGCGCGCGCCGCTTCCGCGACTCCTCCAACTACCGCAAGCACCTCGCCAAGCACGAAGGTTGGTCTGTTTGTATGGGCAGCAAGGCGTTCAACAACGTGTCGTCGCTGCGCAAGCACGCGCTCACGCACACGGAGGAGCGGCCGTACGCGTGCGCCGTGTGCGCGCGCCGCTTCCGCGACTCCTCCAACTACCGCAAGCACCTCGCCAAGCACGAAGAAACGGAGAACGCGTGCACGGTGTGCGGCGTGAAGATGGAGTCCCGCCGCGCGCTGGTGGAGCACGCGCGGGCGGAGCAccccgcggcggcgggcgggcggcccgagcctcgcgcgcgccgcccgcaccagtgcccgcgctgcccgcagGCCTTCCACTCCGGGAAGGACATGAGGAGGCACGCGGCCGTGCATTCCGATTCAAAGCCGTTTCGTTGCAAGGTGTGCAACCGTCGCTTCCGGCGGAAGGACAACTTGGAGCGTCACATCCGCAACACGCACCGCGACTGCGACACGGCCGCCGTGGTGGAGTGCGACGCGGCCGCGCTCGACCTGATGGCCGCGACCGACGCGCCGCCCGATAGCGACGACACCTATCGCCACGCCGAGAAAGCGAAACTCGAGAGCCTCAACCCGCTGCCACCCCTACCGCAGGAAGTCATCCAGCGACACCTCGACTCGAACGAGGTCAAACAAGTGACTACTACTAACAAGGAGGTCAACGAGAACATAAGTCAGAACAATCAGGAGGGGGTCACGTGTATCGATAAATCGTACATTCTAGAAGCGAATAACGCGCGTGAGAGCGTCATTGTTGGCAAGTGGAATGCGACGGATAGGAAAGTGTCGAGTCCGGTGCCGGAGTATGTCCACAAGATAAGGAAGGCGAATTCGGTTGCGTGCAGAAAGGACGTGTTGCTACCGCCCATAGACGAGAGGAAGCTAATAGAGTTGGAAGCCAAAAACAATTTGAACAATCTAGACGTGGGCGCGCCTGTGAAGAATATGGAGATTTACAAGAAGATTCTCTACGAACGGATGGAGAAGGACTCTGGCGCGGCGGGGGAGGAAGATAAGATGCACCAGACGAGCCCCAAGCTGCACTGGAGGAGGAAATtgaaacttaatattaattggtGA
- Protein Sequence
- MNSQVCVNCNNKKPVNLTTNRLVTESCGHVKCMDCLLHEKAGCAVCLRESCDQESGDVQLPESDGDEQVKLNVIEVPVEFTTDLIENQTDLEDLSKKVKPETSHVRIESDGNSRYFVCTLCKKKFHARSQVAYHAYCNGQRKPYQCPDCNKSFAALSHFKYHMNVHRNERTYSCEECGDSFFQMSKLQRHKLKHTKEKKYACVQCSKAFNNVSSLRKHALTHTEERPYACAVCARRFRDSSNYRKHLAKHEGWSVCMGSKAFNNVSSLRKHALTHTEERPYACAVCARRFRDSSNYRKHLAKHEGWSVCMGSKAFNNVSSLRKHALTHTEERPYACAVCARRFRDSSNYRKHLAKHEGWSVCMGSKAFNNVSSLRKHALTHTEERPYACAVCARRFRDSSNYRKHLAKHEGWSVCMGSKAFNNVSSLRKHALTHTEERPYACAVCARRFRDSSNYRKHLAKHEGWSVCMGSKAFNNVSSLRKHALTHTEERPYACAVCARRFRDSSNYRKHLAKHEETENACTVCGVKMESRRALVEHARAEHPAAAGGRPEPRARRPHQCPRCPQAFHSGKDMRRHAAVHSDSKPFRCKVCNRRFRRKDNLERHIRNTHRDCDTAAVVECDAAALDLMAATDAPPDSDDTYRHAEKAKLESLNPLPPLPQEVIQRHLDSNEVKQVTTTNKEVNENISQNNQEGVTCIDKSYILEANNARESVIVGKWNATDRKVSSPVPEYVHKIRKANSVACRKDVLLPPIDERKLIELEAKNNLNNLDVGAPVKNMEIYKKILYERMEKDSGAAGEEDKMHQTSPKLHWRRKLKLNINW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00277540;
- 90% Identity
- iTF_00277540;
- 80% Identity
- iTF_00277540;