Cpal004236.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- Rreb1
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000045.1:1017287-1024156[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.32 18 6.1 0.8 1 19 116 134 116 135 0.85 2 18 1.2e-06 7.3e-05 23.1 1.8 1 23 144 166 144 166 0.99 3 18 0.00064 0.037 14.6 1.6 1 23 172 194 172 194 0.98 4 18 6.5e-05 0.0038 17.7 0.4 1 23 200 222 200 222 0.97 5 18 4.7e-05 0.0028 18.2 0.6 1 23 228 250 228 250 0.97 6 18 0.25 15 6.4 0.3 8 23 260 275 259 275 0.95 7 18 4.7e-05 0.0028 18.2 0.6 1 23 281 303 281 303 0.97 8 18 0.25 15 6.4 0.3 8 23 313 328 312 328 0.95 9 18 4.7e-05 0.0028 18.2 0.6 1 23 334 356 334 356 0.97 10 18 0.25 15 6.4 0.3 8 23 366 381 365 381 0.95 11 18 4.7e-05 0.0028 18.2 0.6 1 23 387 409 387 409 0.97 12 18 0.25 15 6.4 0.3 8 23 419 434 418 434 0.95 13 18 4.7e-05 0.0028 18.2 0.6 1 23 440 462 440 462 0.97 14 18 0.25 15 6.4 0.3 8 23 472 487 471 487 0.95 15 18 4.7e-05 0.0028 18.2 0.6 1 23 493 515 493 515 0.97 16 18 2.2 1.3e+02 3.5 0.0 3 23 522 543 521 543 0.93 17 18 0.018 1 10.1 1.1 1 23 559 581 559 581 0.96 18 18 9.7e-08 5.6e-06 26.6 3.1 1 23 587 610 587 610 0.97
Sequence Information
- Coding Sequence
- ATGAATTCTCAAGTTTGTGTGAATTGTAACAATAAGAAACCTGTGAACTTGACTACGAATCGGCTGGTAACGGAGAGTTGTGGTCATGTGAAGTGTATGGATTGCCTTCTTCATGAGAAGGCTGGATGTGCGGTTTGTTTGAGAGAAAGCTGTGACCAGGAGTCTGGAGACGTCCAGCTGCCAGAGAGTGATGGTGACGAGCAGGTCAAGCTAAACGTTATCGAGGTTCCTGTTGAATTTACGACTGACTTAATAGAAAATCAGACTGATCTTGAAGACTTAAGTAAGAAGGTGAAGCCGGAGACTTCTCATGTTAGGATAGAGTCTGATGGTAATAGCCGATATTTTGTGTGCACTCTGTGCAAGAAGAAATTCCATGCCCGCAGCCAAGTAGCATACCATGCATACTGCAATGGCCAGAGGAAGCCATACCAGTGTCCTGATTGCAATAAGAGCTTTGCAGCTCTCTCACATTTCAAGTATCACATGAACGTGCATCGTAATGAGAGAACATACTCGTGCGAGGAGTGTGGCGACAGCTTCTTCCAGATGTCTAAACTGCAGAGACACAAGCTCAAGCACACCAAAGAGAAAAAGTACGCGTGCGTACAGTGCAGCAAGGCGTTCAACAACGTGTCGTCGCTGCGCAAGCACGCGCTCACGCACACGGAGGAGCGGCCGTACGCGTGCGCCGTGTGCGCGCGCCGCTTCCGCGACTCCTCCAACTACCGCAAGCACCTCGCCAAGCACGAAGGTTGGTCTGTTTGTATGGGCAGCAAGGCGTTCAACAACGTGTCGTCGCTGCGCAAGCACGCGCTCACGCACACGGAGGAGCGGCCGTACGCGTGCGCCGTGTGCGCGCGCCGCTTCCGCGACTCCTCCAACTACCGCAAGCACCTCGCCAAGCACGAAGGTTGGTCTGTTTGTATGGGCAGCAAGGCGTTCAACAACGTGTCGTCGCTGCGCAAGCACGCGCTCACGCACACGGAGGAGCGGCCGTACGCGTGCGCCGTGTGCGCGCGCCGCTTCCGCGACTCCTCCAACTACCGCAAGCACCTCGCCAAGCACGAAGGTTGGTCTGTTTGTATGGGCAGCAAGGCGTTCAACAACGTGTCGTCGCTGCGCAAGCACGCGCTCACGCACACGGAGGAGCGGCCGTACGCGTGCGCCGTGTGCGCGCGCCGCTTCCGCGACTCCTCCAACTACCGCAAGCACCTCGCCAAGCACGAAGGTTGGTCTGTTTGTATGGGCAGCAAGGCGTTCAACAACGTGTCGTCGCTGCGCAAGCACGCGCTCACGCACACGGAGGAGCGGCCGTACGCGTGCGCCGTGTGCGCGCGCCGCTTCCGCGACTCCTCCAACTACCGCAAGCACCTCGCCAAGCACGAAGGTTGGTCTGTTTGTATGGGCAGCAAGGCGTTCAACAACGTGTCGTCGCTGCGCAAGCACGCGCTCACGCACACGGAGGAGCGGCCGTACGCGTGCGCCGTGTGCGCGCGCCGCTTCCGCGACTCCTCCAACTACCGCAAGCACCTCGCCAAGCACGAAGAAACGGAGAACGCGTGCACGGTGTGCGGCGTGAAGATGGAGTCCCGCCGCGCGCTGGTGGAGCACGCGCGGGCGGAGCAccccgcggcggcgggcgggcggcccgagcctcgcgcgcgccgcccgcaccagtgcccgcgctgcccgcagGCCTTCCACTCCGGGAAGGACATGAGGAGGCACGCGGCCGTGCATTCCGATTCAAAGCCGTTTCGTTGCAAGGTGTGCAACCGTCGCTTCCGGCGGAAGGACAACTTGGAGCGTCACATCCGCAACACGCACCGCGACTGCGACACGGCCGCCGTGGTGGAGTGCGACGCGGCCGCGCTCGACCTGATGGCCGCGACCGACGCGCCGCCCGATAGCGACGACACCTATCGCCACGCCGAGAAAGCGAAACTCGAGAGCCTCAACCCGCTGCCACCCCTACCGCAGGAAGTCATCCAGCGACACCTCGACTCGAACGAGGTCAAACAAGTGACTACTACTAACAAGGAGGTCAACGAGAACATAAGTCAGAACAATCAGGAGGGGGTCACGTGTATCGATAAATCGTACATTCTAGAAGCGAATAACGCGCGTGAGAGCGTCATTGTTGGCAAGTGGAATGCGACGGATAGGAAAGTGTCGAGTCCGGTGCCGGAGTATGTCCACAAGATAAGGAAGGCGAATTCGGTTGCGTGCAGAAAGGACGTGTTGCTACCGCCCATAGACGAGAGGAAGCTAATAGAGTTGGAAGCCAAAAACAATTTGAACAATCTAGACGTGGGCGCGCCTGTGAAGAATATGGAGATTTACAAGAAGATTCTCTACGAACGGATGGAGAAGGACTCTGGCGCGGCGGGGGAGGAAGATAAGATGCACCAGACGAGCCCCAAGCTGCACTGGAGGAGGAAATtgaaacttaatattaattggtGA
- Protein Sequence
- MNSQVCVNCNNKKPVNLTTNRLVTESCGHVKCMDCLLHEKAGCAVCLRESCDQESGDVQLPESDGDEQVKLNVIEVPVEFTTDLIENQTDLEDLSKKVKPETSHVRIESDGNSRYFVCTLCKKKFHARSQVAYHAYCNGQRKPYQCPDCNKSFAALSHFKYHMNVHRNERTYSCEECGDSFFQMSKLQRHKLKHTKEKKYACVQCSKAFNNVSSLRKHALTHTEERPYACAVCARRFRDSSNYRKHLAKHEGWSVCMGSKAFNNVSSLRKHALTHTEERPYACAVCARRFRDSSNYRKHLAKHEGWSVCMGSKAFNNVSSLRKHALTHTEERPYACAVCARRFRDSSNYRKHLAKHEGWSVCMGSKAFNNVSSLRKHALTHTEERPYACAVCARRFRDSSNYRKHLAKHEGWSVCMGSKAFNNVSSLRKHALTHTEERPYACAVCARRFRDSSNYRKHLAKHEGWSVCMGSKAFNNVSSLRKHALTHTEERPYACAVCARRFRDSSNYRKHLAKHEETENACTVCGVKMESRRALVEHARAEHPAAAGGRPEPRARRPHQCPRCPQAFHSGKDMRRHAAVHSDSKPFRCKVCNRRFRRKDNLERHIRNTHRDCDTAAVVECDAAALDLMAATDAPPDSDDTYRHAEKAKLESLNPLPPLPQEVIQRHLDSNEVKQVTTTNKEVNENISQNNQEGVTCIDKSYILEANNARESVIVGKWNATDRKVSSPVPEYVHKIRKANSVACRKDVLLPPIDERKLIELEAKNNLNNLDVGAPVKNMEIYKKILYERMEKDSGAAGEEDKMHQTSPKLHWRRKLKLNINW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00277812;
- 90% Identity
- iTF_00277812;
- 80% Identity
- iTF_00277812;