Csas001302.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- -
- Assembly
- GCA_014607495.2
- Location
- CP053170.1:4987286-4987720[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-09 2.4e-07 31.0 0.0 1 37 14 50 14 57 0.89
Sequence Information
- Coding Sequence
- ATGTCTGAGTCAAAACCCAGGAAAAGAGGTAGTACATGGGATGAAGACAGTTTAAGACGTGCCATGGAAGCAGTACAAAATAATCAACTTAATACAAATGCTGCAGCGTTGAAGTTCAATATTCCAAGACGCACCCTTAGAAACCATTTAGTAAGCGGTAAAAGTACTAAAATAATTGGGAAGACAACTATTCTTACAAAACAATTAGAAGAAGATTTATCGCAGCGAATCAAACGTTTTGCAAAACTGGGTGTACCACTTACGCCTAAATTTATCAGGAAACAAGCATTTTTATTTTGTGAGAGATTTAAAATCAAGCACTCGTTTAATATGTCAACAAGAATGGCTGGACGCAAATGGCTCAAAATGTTTTTGGTTCGAAACCCATCAATATCAAAAAGAAAACCCCAGCTAATGAATCCAGCTAGAGCTTAA
- Protein Sequence
- MSESKPRKRGSTWDEDSLRRAMEAVQNNQLNTNAAALKFNIPRRTLRNHLVSGKSTKIIGKTTILTKQLEEDLSQRIKRFAKLGVPLTPKFIRKQAFLFCERFKIKHSFNMSTRMAGRKWLKMFLVRNPSISKRKPQLMNPARA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00781772; iTF_00786693; iTF_01360553; iTF_01564590; iTF_01156342; iTF_01156272; iTF_00821714; iTF_00162557; iTF_01178399; iTF_01208094; iTF_00276256;
- 90% Identity
- iTF_00276256;
- 80% Identity
- -