Hnum028770.1
Basic Information
- Insect
- Heliconius numata
- Gene Symbol
- -
- Assembly
- GCA_016802625.1
- Location
- JAEBDU010000038.1:1865542-1866084[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-09 1.7e-06 28.3 0.0 1 44 14 57 14 57 0.95 2 2 5.8 9.7e+03 -2.9 0.1 17 25 111 119 110 119 0.84
Sequence Information
- Coding Sequence
- ATGTCAGTATCCAAACCTAGAAAAAGAGGAAGTACATGGGACGAAGATAGTTTAAGACGTGCTATGGAAGCAGTACAAAATAATCAACTTAATACAAATGCTACAGCGTTAAAATTCAATATTCCAAGACGCACCCTTAGAAACCATTTACAAAGCGGTAACAGTACTAAAATTATTGGAAAGACAACTGTTCTCACAAAACAGCTAGAGGAAGACTTATCGCAGCGAATGAAACGTTTTGCTGAACTGGGTTTACCGCTTACCACTAAATTTATCCGGAAACAAGCGTTTTTATTTTGTGAGAGCTTTAAAATCAAGCACTCGTTCAATATGTCTACAAGGATGGCTGGACGCAAATGGCTTAAAATGTTTTTGGTTCGAAATCCATCAATATCAAAAAGAAAACCCCAAATAATGAATCCAGCTAGAGCCCAAAAAATTAATAAGCCCACTGTGAAACACCATTTCGAAGAAGTGAAGAAACTATATCAAGAGTTAGACATTATCGCACACTCAGAACTGTTGTATATTGCACAAGGATGA
- Protein Sequence
- MSVSKPRKRGSTWDEDSLRRAMEAVQNNQLNTNATALKFNIPRRTLRNHLQSGNSTKIIGKTTVLTKQLEEDLSQRMKRFAELGLPLTTKFIRKQAFLFCESFKIKHSFNMSTRMAGRKWLKMFLVRNPSISKRKPQIMNPARAQKINKPTVKHHFEEVKKLYQELDIIAHSELLYIAQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00276260;
- 90% Identity
- iTF_00276256;
- 80% Identity
- -