Slub013872.1
Basic Information
- Insect
- Spilosoma lubricipeda
- Gene Symbol
- -
- Assembly
- GCA_905220595.1
- Location
- HG992284.1:5098570-5098989[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8e-10 7e-07 29.8 0.0 1 39 14 52 14 57 0.88 2 2 4.3 6.2e+03 -2.0 0.0 17 25 111 119 110 120 0.86
Sequence Information
- Coding Sequence
- ATGTCAGGATCAAAACCTAGAAAAAGGGGTAGTACATGGGATGAAGATAGTTTAAGACGTGCCATGGAAGCAGTACAAAACAATGAACTAAATACAAATGCTGCTGCGTTAAAATTCAATATTCCAAGACGCACTCTTAGAAACCATTTACTAAGTGGTAACAGTACTAAAATTATTGGGAAGACAACTATCCTTACAAAACAATTAGAAGAAGACTTATCGCAGCGAATCAAACGTTTTGCTAAACTGGGTATACCACTTACTCCTAAATTTATTCGGAAACAAGCCTTTTTATTTTGTGAGAGGTTCAAAATCAAGCATTCGTTCAATATGTCTACAAGAATGGCTGGACGCAAATggcttaaaatgtttttaattcgaAATCCATCCATATCAAAAAGAAAACCCCAGAAGAAGTGA
- Protein Sequence
- MSGSKPRKRGSTWDEDSLRRAMEAVQNNELNTNAAALKFNIPRRTLRNHLLSGNSTKIIGKTTILTKQLEEDLSQRIKRFAKLGIPLTPKFIRKQAFLFCERFKIKHSFNMSTRMAGRKWLKMFLIRNPSISKRKPQKK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00276260;
- 90% Identity
- iTF_00276256;
- 80% Identity
- -