Basic Information

Insect: Caradrina clavipalpis
Gene Symbol: -
Assembly: GCA_932526535.1
Location: OW052099.1:3221512-3228852[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0024 0.16 12.7 2.3 1 23 129 151 129 151 0.96

2 12 0.0009 0.058 14.1 1.8 2 23 157 178 156 178 0.96

3 12 5.7e-06 0.00037 21.0 2.4 2 23 214 235 213 235 0.97

4 12 1.9e-05 0.0012 19.4 1.2 1 20 244 263 244 266 0.93

5 12 2e-06 0.00013 22.5 0.4 2 23 273 294 272 294 0.96

6 12 5.9e-06 0.00038 21.0 3.4 1 23 300 322 300 322 0.99

7 12 4e-08 2.6e-06 27.8 1.2 1 23 328 350 328 350 0.96

8 12 2e-05 0.0013 19.3 2.4 1 23 356 378 356 378 0.98

9 12 5.9e-06 0.00038 21.0 0.9 1 23 384 406 384 406 0.98

10 12 0.0029 0.18 12.5 6.4 1 23 412 434 412 434 0.97

11 12 1.2e-06 7.4e-05 23.2 1.7 1 23 440 462 440 462 0.98

12 12 0.0004 0.025 15.2 0.5 1 20 468 487 468 490 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0024	0.16	12.7	2.3	1	23	129	151	129	151	0.96
2	12	0.0009	0.058	14.1	1.8	2	23	157	178	156	178	0.96
3	12	5.7e-06	0.00037	21.0	2.4	2	23	214	235	213	235	0.97
4	12	1.9e-05	0.0012	19.4	1.2	1	20	244	263	244	266	0.93
5	12	2e-06	0.00013	22.5	0.4	2	23	273	294	272	294	0.96
6	12	5.9e-06	0.00038	21.0	3.4	1	23	300	322	300	322	0.99
7	12	4e-08	2.6e-06	27.8	1.2	1	23	328	350	328	350	0.96
8	12	2e-05	0.0013	19.3	2.4	1	23	356	378	356	378	0.98
9	12	5.9e-06	0.00038	21.0	0.9	1	23	384	406	384	406	0.98
10	12	0.0029	0.18	12.5	6.4	1	23	412	434	412	434	0.97
11	12	1.2e-06	7.4e-05	23.2	1.7	1	23	440	462	440	462	0.98
12	12	0.0004	0.025	15.2	0.5	1	20	468	487	468	490	0.94

Sequence Information

Coding Sequence: ATGCTAGACATAACAACGTCGTGTCGAACGTGTATGAAGGACAATGTGACTTTGGTCGACTTATATGAAACAGTTGAAATTGAGGAAAACTGTTTCCAATTATCTGATTTACTTGAGCAGTGTACTCTAACAGAGATCTCCAAGGAGGATGGGTTACCACAGCACGTTTGTGACGCTTGTGTTAAGGTGCTGCGTCTTGTATACTCATTCCGTAAGCAAGCGGCAAAGGCTCAAGATGAGTTTAAAAAACTCCTACAAGGAAGTGTAAAAACAGAACCTGAAGACGTAGAACTCAAATCAGAGATGGATCATGACTATTTTTCAATTTATGGAAATTTAAGTTACAATCCCAATATTACCAAAACTGAGGTCGAAGACAAAGAATATGAATGTACTAAATGTAATAAACTGTTTACTAAAGAAAAGAAATACTTGAAACATTTGGAAGCACATGAAAATTTATCACTAGAATGTGACATTTGTCAAAAGTTATGTTCTAACCAGACATTGTTGGAAAAACACAGAGCGAAGCACATCAATATGTGTTTTGTTACCGAGTCACTCTTACTGGATGAGATGGTGGAACACGCTCAGGAGGTTGAAGTTAAAACGGAAAATGTCTCACCGTTACCAACATTACAGTGTACAGATTGTAATCTAACTTTTACAAAGCAAAGATCGCTGTCAATGCACATGAGAAAACATAGAAATAAAGATGAGAAGCAAGAATACGTCTGTGATACGTGCGACAAGACGTTTGCTAAGAAACATTTGTTGCAACGACATGTCCCGATGCATAGTGAAGTAAAGCCGCTCAAATGTGAGAAATGTCCTAAAACGTATGCAAGACGTGACCAGCTTATTGCCCACATGTACTCTCACAAAGAACACAAGCCTTATGTCTGTGAATATTGCAAGAAAAGTTTTGCCCAGATGTGCAGTCTAAAGGACCATCTTCGTACCCACACTGGAGAGACCCCGTACCTGTGTTCTCAGTGTGGCAAGGGATTCTCCAACAATTCCAACTTGAGGCAGCACATGATGAGGCATACCGGAGTCAAGCCGTATGCTTGTAACTTGTGCCCGAAGACATTCTGTACTAAAGGTCAAATGAGGTCACACGTGTCCACGCACAGTGGTGAACACCCTTACAAATGTGAGAAGTGTGGAGCTGCCTTTACCAAGCAGAACTCTTTGAAGAAACACTCCATGATACACCTGTCTATACGACCCTTTGCCTGCGATACTTGTAATATGAGATTTACCTGCAAAGACCACCTGAAGCGTCACACCAGGATACACACCGGCGAGAAGCCGTACAAGTGCAACTACTGCGAGCGAGCCTTCTCGCAGAGCAACGACCTGGTGAAGCACACGCGCCAGCACATCGGACAGAACATATACCAGTGCACAATATGCGGGTCCCGATTCCGTCTACTATCAGAACTAAAACAACACTATCCGGTACACTTCGCTAACGGCAAGGACGAGGCTTCTGACCCACAAAACAGTACCAAAGACAACACAGAACTAACCACAAACGAGCAAAAACCTCCAGACTTTAACCTTATGACCTTCAAAAATGATAAAGACATTTTAAAAGAGCCAGAGGTTGCTAAGGAACTACCGATGTTGCCTTTAAAGCCTCCAGATGGCGCTGAGAGCGATGCGGTAAAATCGTGTACGGATTCGAATAGAATTGTTATCACTACTATCAGTTGTGATACGAATGGTATTGTCAATGGAATCACTATTAAGCTACCTAAAGAGAGCTAA
Protein Sequence: MLDITTSCRTCMKDNVTLVDLYETVEIEENCFQLSDLLEQCTLTEISKEDGLPQHVCDACVKVLRLVYSFRKQAAKAQDEFKKLLQGSVKTEPEDVELKSEMDHDYFSIYGNLSYNPNITKTEVEDKEYECTKCNKLFTKEKKYLKHLEAHENLSLECDICQKLCSNQTLLEKHRAKHINMCFVTESLLLDEMVEHAQEVEVKTENVSPLPTLQCTDCNLTFTKQRSLSMHMRKHRNKDEKQEYVCDTCDKTFAKKHLLQRHVPMHSEVKPLKCEKCPKTYARRDQLIAHMYSHKEHKPYVCEYCKKSFAQMCSLKDHLRTHTGETPYLCSQCGKGFSNNSNLRQHMMRHTGVKPYACNLCPKTFCTKGQMRSHVSTHSGEHPYKCEKCGAAFTKQNSLKKHSMIHLSIRPFACDTCNMRFTCKDHLKRHTRIHTGEKPYKCNYCERAFSQSNDLVKHTRQHIGQNIYQCTICGSRFRLLSELKQHYPVHFANGKDEASDPQNSTKDNTELTTNEQKPPDFNLMTFKNDKDILKEPEVAKELPMLPLKPPDGAESDAVKSCTDSNRIVITTISCDTNGIVNGITIKLPKES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00810315; iTF_00809386; iTF_00177401; iTF_00274609;
90% Identity: -
80% Identity: -