Hamb014339.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- -
- Assembly
- GCA_949774945.1
- Location
- OX458976.1:11837439-11842866[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0011 0.078 14.1 3.4 1 23 129 151 129 151 0.96 2 12 0.00015 0.011 16.7 0.3 2 23 157 178 156 178 0.96 3 12 5.5e-06 0.00041 21.2 2.9 2 23 221 242 220 242 0.97 4 12 1.8e-05 0.0014 19.6 1.9 1 23 251 273 251 273 0.96 5 12 6.3e-06 0.00046 21.1 2.8 1 23 279 301 279 301 0.97 6 12 3.4e-05 0.0025 18.7 3.6 1 23 307 329 307 329 0.99 7 12 2.1e-08 1.6e-06 28.8 0.9 1 23 335 357 335 357 0.96 8 12 2.3e-05 0.0017 19.3 2.4 1 23 363 385 363 385 0.98 9 12 6.8e-06 0.00051 20.9 0.9 1 23 391 413 391 413 0.98 10 12 0.0033 0.25 12.5 6.4 1 23 419 441 419 441 0.97 11 12 1.7e-06 0.00012 22.9 2.1 1 23 447 469 447 469 0.98 12 12 0.00097 0.071 14.2 0.4 1 20 475 494 475 497 0.94
Sequence Information
- Coding Sequence
- ATGCTAGACATAACTACGTCGTGTCGAACGTGTATGAAGGACAATGTGACATTGGTGAACTTGTATGAAATAGTTGAAGTTGAGGAAAACTGTCTCCAATTATCTGATTTACTTGTGCAGTGTACTCTATTTGAGgtcgCCAAGGAGGATGGGTTACCACAGCAGCTTTGTGACGCCTGTGTTAAGGTGCTGCAGCTTGTATACTCATTCCGTAAGCAGGCGACTAAGGCTCAGGATGAGTTTAAAAAACTCCTACAAGGAAATGTAAAAACAGAACCAGAAGAAGTAGACCTCAAATCAGAGAATGACCATGACTATTTTGCAACTTACGAAGACTTCAATTTCAACGCCGATTTTTCTAAAACTGAGATCGAAGACAAAGAATATACATGTACTAAATGTAATAAACAGTTTACTAAAGAGAAGAAATACTTGAAACATTTGGAAGGACATGAAAGTTTATCACTAGAATGTGATGTTTGTGAGAAGGTATATTCTAACCAGACATTGTTGGATAAACACAGAGCCAAGCACAATACAAATATGTGTTTTGTTGGCGATCAACACTTTGTGAGTGAGACACTCTTACTGGATGAGATGGTAGAACACATTCACGAAGTTGAAGTTAAAACTGAGAACGCATCGCCAGTACCAACGTTACAATGTACAGATTGCAAGCTAACATTTACTAAGCAAAGATCACTAACAATGCACATGAGAAAACATAGAATCAAAAATGAGAAGCAAGAATTCATCTGTGATATTTGCACTAAGACTTTTGCTAAGAAACACTTGTTGAAACGTCATGTCGTGATGCATAGTGAAGTAAAGCCACACAAATGTGAGAAATGTCCTAAAACATATGCACGACGTGACCAGCTCATGTCTCACATGTACTCTCATAAAGAAAACAAGCCTTATGTTTGTGAATTCTGCAAGAAAAGTTTTGCCCAGATGTGCAGTCTAAAGGATCATCTTCGTACCCACACTGGAGAGACCCCATACCTGTGTTCAGAGTGTGGCAAGGGTTTCTCCAACAATTCCAACCTGAGGCAGCATATGATGAGGCATTCCGGAGTCAAGCCATATGCTTGTAACTTGTGCCCTAAGACATTCTGTACTAAAGGTCAAATGAGGTCTCACGTGTCCACGCACACCGGTGAACATCCTTATAAATGCGAGAAGTGTGGAGCCGCCTTTACCAAGCAGAACTCTTTGAAGAAACACTCCATGATACACCTGTCTATACGACCCTTTGCCTGCGATACTTGTAATATGAGGTTCACCTGCAAAGATCACTTGAAGCGTCACACCAGGATACATACGGGCGAGAAGCCGTACAAGTGCAAGTACTGCGAGCGAGCCTTCTCACAGAGCAATGACTTAGTGAAACACACGCGACAGCACATCGGACAGAATATATACCAGTGCACAATATGCGGGTCCCGGTTCCGTCTACTATCCGAACTAAAACTCCACTATCCGGTACACTTCGCTGACGGCAAGGTGGACGAGGCGTTTGAACAGCAAAACAGTACCAAAGACAACACAGAACTAATGGCCAACGAACTTAAACCTCCAGAATTTAACCTTATGACCTTCAAAAATGATAAGGACCATATTTTAAAGGCTCCGGAGGTTGATAAGGATGTTCCGGTATTGAATTCGAAGCCTCAAGATGGCGGAGAGGGCGAGGCCGTGCGATCGTGTGCTGATTCGAATAGAATCGTTATTACTATTAACAGTTGTGATACGAATGGTATTGTCAACGGAATCACTATTAAACTTCCTAAAGAGAGCTAA
- Protein Sequence
- MLDITTSCRTCMKDNVTLVNLYEIVEVEENCLQLSDLLVQCTLFEVAKEDGLPQQLCDACVKVLQLVYSFRKQATKAQDEFKKLLQGNVKTEPEEVDLKSENDHDYFATYEDFNFNADFSKTEIEDKEYTCTKCNKQFTKEKKYLKHLEGHESLSLECDVCEKVYSNQTLLDKHRAKHNTNMCFVGDQHFVSETLLLDEMVEHIHEVEVKTENASPVPTLQCTDCKLTFTKQRSLTMHMRKHRIKNEKQEFICDICTKTFAKKHLLKRHVVMHSEVKPHKCEKCPKTYARRDQLMSHMYSHKENKPYVCEFCKKSFAQMCSLKDHLRTHTGETPYLCSECGKGFSNNSNLRQHMMRHSGVKPYACNLCPKTFCTKGQMRSHVSTHTGEHPYKCEKCGAAFTKQNSLKKHSMIHLSIRPFACDTCNMRFTCKDHLKRHTRIHTGEKPYKCKYCERAFSQSNDLVKHTRQHIGQNIYQCTICGSRFRLLSELKLHYPVHFADGKVDEAFEQQNSTKDNTELMANELKPPEFNLMTFKNDKDHILKAPEVDKDVPVLNSKPQDGGEGEAVRSCADSNRIVITINSCDTNGIVNGITIKLPKES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00273816;
- 90% Identity
- iTF_00810315;
- 80% Identity
- -