Ckad004430.1
Basic Information
- Insect
- Caradrina kadenii
- Gene Symbol
- -
- Assembly
- GCA_947462355.1
- Location
- OX381684.1:2821159-2825110[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0029 0.17 12.5 1.5 3 23 131 151 130 151 0.95 2 12 0.0021 0.12 12.9 0.9 2 23 157 178 156 178 0.96 3 12 1.1e-05 0.00065 20.1 3.1 2 23 216 237 215 237 0.97 4 12 2.1e-05 0.0012 19.2 3.4 1 23 246 268 246 268 0.96 5 12 6.7e-06 0.00039 20.8 2.0 1 23 274 296 274 296 0.97 6 12 5.3e-05 0.0031 17.9 2.5 1 23 302 324 302 324 0.98 7 12 4e-08 2.3e-06 27.8 0.5 1 23 330 352 330 352 0.96 8 12 5.8e-06 0.00034 21.0 0.9 1 23 358 380 358 380 0.98 9 12 3.6e-05 0.0021 18.5 1.3 1 23 386 408 386 408 0.96 10 12 0.0073 0.42 11.2 6.4 1 23 414 436 414 436 0.97 11 12 3e-06 0.00018 21.9 3.3 1 23 442 464 442 464 0.98 12 12 0.00089 0.052 14.1 0.5 1 20 470 489 470 492 0.94
Sequence Information
- Coding Sequence
- ATGCTAGACATAACAACCTCGTGTCGTACGTGTATGAAGGACAATGTGACTTTGGTCAGCTTGTATGAACTAGTTGAAATTGGGGAAAACTGGCTTCTATTGTCTGATTTACTTGAGCAGTGTATTCTAATCGAGATCCCCAAGGAGGATGGGTTACCCCAGCACGTATGTAGCGCCTGTGTTAAGGTGCTGCAACTTGTATACTCATTCCGTAAGCGGGCGACGAAGGCTCAGGATGAGTTTAAGAAACTTCTACTAGGAAATGTAAAAACAGAACCTCAAGAAGTAGATCTCAAATCAGAGATGGATCATGACTATTTTTCAATTTATGGAAATTGCAATTACAAACCCAATATTTCCAAAATTGAGGCCGAAGACAAAGTTAACATATGTACTAAATGTAATAAAGAGTTTACTAAAGAAAAGAAATACTTGAAACATTTGGAAGCACACAAAAATGTATCGCTAGAATGTGACATTTGTCAAAAGCTATATCCTAACCACACATTGTTGGAAAAACACAGAGCCAAGCATGTTAGCATCAATATGTGTTTTGTGAAAGAGGCACTCTTACTGGATGAGACGGGGGAACACATTCAGCAAGTTGAAGTTAAAACGGAGACCAAGTCACCAGTATCAACATTAAAATGCACAGATTGTAGTCAAACATTTACAAAGCAAAGATCGCTGTCAATGCACATGAGAAAACATCGAAATAAAGATGAGAAGCAAGAATACATCTGTGATACTTGCAAAAAGACTTTCACTAAGAAGCATTTGTTGCAACGACATGTTGTGATGCATAGTGAAGTAAAGCCACACAAATGTGGGAAATGTCCTAAAACATATGCAAGACGTGACCAGCTTATTTCTCACATGTACTCTCACGATGAACGCAAGCCTTATGTCTGTGAATTCTGCAGGAAAAGTTTTGTCCAGATGTGCAGTCTTAAGGACCACATTCGTATTCACACTGGTGAGACCCCATACCTGTGTTCAGAGTGTGGCAAGGGTTTCGCCAACAATTCTAACTTGAGACAGCATATGATGAGACATACGGGAGCCAAGCCATATCCTTGTAACTTGTGCCCTAAGGCATTCTGTACTAAAGGTCAGATGAGGGCACACGTGTCCACACACAGCGGTGACCACCCTCACAAATGCGACAAGTGCGGAGCCGCCTTTACCAAGCCGAACTCTTTGAAGAAGCACTCCTTGATACACCTGCCTATACGGCCGTTTGCCTGCGATACTTGTAGTATGAGGTTCACCTGCAAAGATCACCTAAAGCGTCACACCAGGATACACACTGGTGAGAAGCCGTACAAATGCAATCACTGCGAGCGAGCCTTCTCACAGAGTAACGACTTAGTGAAGCACACGCGCCAGCACATCGGACAGAACATATACCAGTGCACAATATGCGGCTCTCGGTTCCGTCTAATGTCAGAACTAAAACAACACTATCCGGTACACTTCACTGACAGCAAGGACGAAGCTCGTGATCCACAAAACAGTACCAAGGACGACACAAAAGTACCCGCCAACGACCTTAAACCTCCAGACTACAGCCTTTTGACCTTTAAAAATGAAAAAGACGTGGTTAAAGCTCCAGAGGTTGATCAGGAACTACCGATATTGCCTCTGAAGCCTCCAGCTGACGCTGGGAGCGATCCTGTTAAATCAGATGCGGATTTGGGTAGAGTCATTATTACTACTATCAGTTGTGATACGAATGGTCTGGTCAATGGAATCACTATTAAACTGCCTAAATAG
- Protein Sequence
- MLDITTSCRTCMKDNVTLVSLYELVEIGENWLLLSDLLEQCILIEIPKEDGLPQHVCSACVKVLQLVYSFRKRATKAQDEFKKLLLGNVKTEPQEVDLKSEMDHDYFSIYGNCNYKPNISKIEAEDKVNICTKCNKEFTKEKKYLKHLEAHKNVSLECDICQKLYPNHTLLEKHRAKHVSINMCFVKEALLLDETGEHIQQVEVKTETKSPVSTLKCTDCSQTFTKQRSLSMHMRKHRNKDEKQEYICDTCKKTFTKKHLLQRHVVMHSEVKPHKCGKCPKTYARRDQLISHMYSHDERKPYVCEFCRKSFVQMCSLKDHIRIHTGETPYLCSECGKGFANNSNLRQHMMRHTGAKPYPCNLCPKAFCTKGQMRAHVSTHSGDHPHKCDKCGAAFTKPNSLKKHSLIHLPIRPFACDTCSMRFTCKDHLKRHTRIHTGEKPYKCNHCERAFSQSNDLVKHTRQHIGQNIYQCTICGSRFRLMSELKQHYPVHFTDSKDEARDPQNSTKDDTKVPANDLKPPDYSLLTFKNEKDVVKAPEVDQELPILPLKPPADAGSDPVKSDADLGRVIITTISCDTNGLVNGITIKLPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00273816;
- 90% Identity
- -
- 80% Identity
- -