Basic Information

Insect: Caradrina clavipalpis
Gene Symbol: -
Assembly: GCA_932526535.1
Location: OW052093.1:5623181-5632255[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.0067 0.43 11.4 1.1 3 23 699 720 698 720 0.96

2 23 0.22 14 6.6 0.3 1 22 1110 1131 1110 1131 0.95

3 23 7.7 4.9e+02 1.7 0.4 1 22 1173 1194 1173 1196 0.82

4 23 0.012 0.75 10.6 4.9 2 22 1206 1226 1205 1226 0.93

5 23 0.18 11 6.9 0.0 3 23 1235 1256 1233 1256 0.89

6 23 0.02 1.3 9.9 0.3 3 23 1277 1298 1275 1298 0.96

7 23 0.17 11 7.0 2.9 1 23 1304 1327 1304 1327 0.95

8 23 0.13 8.3 7.3 0.0 1 23 1352 1375 1352 1375 0.90

9 23 0.019 1.2 9.9 3.4 1 23 1380 1402 1380 1402 0.97

10 23 0.0089 0.57 11.0 0.2 1 23 1408 1431 1408 1431 0.95

11 23 0.0042 0.27 12.0 0.8 1 23 1444 1466 1444 1466 0.97

12 23 0.00018 0.012 16.3 1.8 1 23 1516 1539 1516 1539 0.97

13 23 0.00015 0.0098 16.5 1.0 1 23 1599 1622 1599 1622 0.96

14 23 0.0024 0.16 12.7 2.1 2 23 1649 1671 1648 1671 0.95

15 23 0.041 2.6 8.9 0.1 2 23 1677 1699 1676 1699 0.94

16 23 0.01 0.65 10.8 0.2 1 21 1743 1763 1743 1764 0.95

17 23 0.00043 0.028 15.1 1.0 1 23 1774 1796 1774 1796 0.93

18 23 0.00012 0.0074 16.9 0.3 2 23 1888 1910 1888 1910 0.93

19 23 4.1e-07 2.6e-05 24.6 1.4 3 23 1917 1937 1916 1937 0.98

20 23 0.031 2 9.3 0.4 1 23 1955 1977 1955 1978 0.95

21 23 0.19 12 6.8 0.0 1 23 2001 2023 2001 2023 0.97

22 23 0.028 1.8 9.4 0.6 1 23 2029 2052 2029 2052 0.95

23 23 0.00026 0.017 15.8 0.4 1 23 2060 2083 2060 2083 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.0067	0.43	11.4	1.1	3	23	699	720	698	720	0.96
2	23	0.22	14	6.6	0.3	1	22	1110	1131	1110	1131	0.95
3	23	7.7	4.9e+02	1.7	0.4	1	22	1173	1194	1173	1196	0.82
4	23	0.012	0.75	10.6	4.9	2	22	1206	1226	1205	1226	0.93
5	23	0.18	11	6.9	0.0	3	23	1235	1256	1233	1256	0.89
6	23	0.02	1.3	9.9	0.3	3	23	1277	1298	1275	1298	0.96
7	23	0.17	11	7.0	2.9	1	23	1304	1327	1304	1327	0.95
8	23	0.13	8.3	7.3	0.0	1	23	1352	1375	1352	1375	0.90
9	23	0.019	1.2	9.9	3.4	1	23	1380	1402	1380	1402	0.97
10	23	0.0089	0.57	11.0	0.2	1	23	1408	1431	1408	1431	0.95
11	23	0.0042	0.27	12.0	0.8	1	23	1444	1466	1444	1466	0.97
12	23	0.00018	0.012	16.3	1.8	1	23	1516	1539	1516	1539	0.97
13	23	0.00015	0.0098	16.5	1.0	1	23	1599	1622	1599	1622	0.96
14	23	0.0024	0.16	12.7	2.1	2	23	1649	1671	1648	1671	0.95
15	23	0.041	2.6	8.9	0.1	2	23	1677	1699	1676	1699	0.94
16	23	0.01	0.65	10.8	0.2	1	21	1743	1763	1743	1764	0.95
17	23	0.00043	0.028	15.1	1.0	1	23	1774	1796	1774	1796	0.93
18	23	0.00012	0.0074	16.9	0.3	2	23	1888	1910	1888	1910	0.93
19	23	4.1e-07	2.6e-05	24.6	1.4	3	23	1917	1937	1916	1937	0.98
20	23	0.031	2	9.3	0.4	1	23	1955	1977	1955	1978	0.95
21	23	0.19	12	6.8	0.0	1	23	2001	2023	2001	2023	0.97
22	23	0.028	1.8	9.4	0.6	1	23	2029	2052	2029	2052	0.95
23	23	0.00026	0.017	15.8	0.4	1	23	2060	2083	2060	2083	0.96

Sequence Information

Coding Sequence: ATGAATGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCCCGTTCTCGCTTTGAAAATCAAGGATTGTGTGTCCGTACAGATAAACGAAAACGATGACCTGCCCACTAATGTCTGCAGGAAATGTGTGGACAATGTCAATAACTGGCATGTTTTTAAAAATGTATGTGAAAGGACACAAAACAAACTACTGTCTCTAAAAGATGGCAGCCAACTAGAAGAGGTGAAAATAAAAAGTGAACCACTATCTGATGAGGCTTATGATGATGGAGTGGTCATTGATGGGTCATATCCTGTCATTGAGAATGCTGGCTTTTCAAACAAAGTGCAACCTGAAGGTCCCCCAATCTTGGCTTCATTGGGGCTCACACCAAGAAGTGATAAGAAATGTGTGGATCCGCGAATGGATTGGCATCGGGTTCATGCAATTTTGGACATGGTTCAAGACAATGAGGTGATTGACTCCCTACAGACAAAGGAAGAGTGTGACGTTTTGCAACATTCAGACCATGATTCAGAAACAGAAGCCGAACTCCAACCAGAAATTGATGATTGTTATGTTGATTGCAAAAGCGGTTACATATGCAAAAATAAAAAAGTTTTATCAAAGGTTCCAAAACTATCTACTTCTGTGAATAATGCCAGAGTCAAAGAAGCCTTCAAACTCAGGAAACGTAAATCTGATGTACGTAAACATTGTTCACGACCTAAAAACGCGTGGCAGTTGTTATTCACCGATGACCTACTAGAATTGATTGTTGCTTCCACTAATGACAATATTGTGACAAATGGGAAAAGTTTCACGGAGTCAACTAGCGTCAGCGAAATTAAAACGCTTATCGGTATTCTGTATCTGCATGGCATAATGCGGCCGACGCATCAGCAATGTAGTGACCTTTGGAACAGTGATTGTGGTGTTCCTTGCGTCAGAAAGGTCATGAAATATGAAAGGTTTAAATTCCTGCTTCAGAACATCAGCTTCGATAAGGAGGACGACGACAGCATTATACAGTTCGACATAATGAAGCGTATGCGCAAAGTATTCGAAATCTTCGCTATGAATTGCAGAACATCTCATGAGATCGAGAATGTCGCAGTTATTGATGAGATCATTGTGCCAGTTTACGGACCTTGCCCATTCCGATACGATATCGATAAGAAACCGCTGAAGCGGGGAATAAAGATGGTACTACTGGTTGATTCATCCACGTTCTATATGAGCAATTTGGATGTCATTACTGATCCTTATTTTGGCGCCGAAGAGATAACGAAAAAGTTGGTGCAGCATTTAGCTGGGTCTGGTAGATCTATTGTTATGGACAGTTGGTTTACATCTTCCTCATTGATTGATAGCCTTAAAAATGAGTATCAGTTGTATTCTATTGCAGCTTTGAACCCAAACAGTACTATGATTCCACCTCTATTCCTGTCTCAATACAGAAAATGTCGATCATTCATGTCTGCATTTATTGATCATGAAGTATCATTGACATCTTATGTCAATGCTGAGGGAAAATCAGTTACTGTATTGACAAATGAGCCTAGATATTATAGGAAAGGTCATATAAACCATACTACGGTTGTATCGGTGTACAAGAAGAATCAGTCTGCAGTAGAAATTGTAGACGTTATTATGAATTATTACACTACAATGCAGCACACCAACGATTGGACATTGTCCTTATTCTTTACGTTGCTGAATATTGCCTCGGTGAACGCTCAAGTGGTGTGGTGCTCCCAAAACACGCATGTAACGCAGCGTCGTTTGTTTATTAAAGATTTAGCTCTAAGCTTACTAGAACCAGACGAAGAAAGAATGATGATATCTCCAATACTTGATTTAGAACAAATGAAAAACAAATTTTCTATCGGTGCGGAGAGTGAAAATAATGAAGAAGACGAGGAAGAAATGAATGAGCCTGCACAAAACTTCCCGAAAATGCCCCACATGCCTGAAGTGTCCATCACGGTCATGAGGCCTACTGGTGAAACTTTGCATGCACGTCAAGGTATCCACCAACTCGCCTCCAAGCTGTGTCTCGTCTGCGGCCGCTCTTACAGGTACTCTCACAACGCTCGCAGACATGAGCTTACAGCTCATAGCTTCGATAGATATACAAACAAAATTACTCCTAAAAAAACCCTCAATCATTTACAACCCAAACTCAGACCGAACCCATTTAACCCTAAAGCACGGATGATGCCGAATCCTATTAGTCATAAGATGCAGTTCTTGAACAAGAACATCTCAGCAAAAATTATGCCCATCAACAAAGTTATAACGCCTCAGAAACCCATTCCAATAAAGACGTCAAAGACGACGACAACACAAAATAATTTGCCTTATCCTCTACGTATTAAAGCACTCAAAGATTTACAAATAAAGAAAAAGGAGCCACAAATTCTAAAGACTTTGTTAACCTCCAAACCTGAAGTTCTGGTGTCAGAACCAGAGATACTTAATTCTGGGCCTGAAAGTCCAGAAACATTGATTTCTGAGCCTGAAATCGCGTCTTTTCAAGTCGAAGCTATCCTTACGGAACCCGATGCCGACGCATACGATGATCCGCAGCAAGGTGATGAAGATGTTGATGAAGATATGCAAAACAATCAAAGTCAAAACTATGACACAGTCGATATGGATTCTGAGAACGAAATAGAGATTGCTCGTCAACAAGGTGTTGAACACGAAGGTGATGATAATGTTGATGGGGATGAAAATATGGATCATGACGACGATAATAACATGGAAGGTGGTCAGAGCGATAACGAGAAAGATGGCCATGACGATACAGCAGAAAGTCAAGAGAACATGGAAGAGGAAGATAGCGTTGACATTAAAGCTGAAGGTGAAATGAAAGACGAGGAGGAGGACCAAGATGAAAGAGATCATGAAGAAATTGAGATGAATCATAACGAAAACGAAGATGATGACGACGATGACCTCCCAATATCGTTGGCGCCAGTCGTCGAAATAAACGAGGGATTGCAAGTCAACTCGTTTAACAACGAAGTTAATGAAGAGGACGACGAACTTGATGAAACCGCTGACGGTGATACTAACGAAACCATCGATGAAGAGGAACCGGTCAAGGAACTTGATCCTGACAAAACATACGTTACAAAAACCCAAAGAGACTTCATCCAAAAATATCGCGACATCATCCAACAGATCAACACGAAGCGTTGTTTATGTTGTGATCGAGAACATCCGCGCAGAAAAGCTGTTATACAACACTTGCAGAAAAACGGACACAAGGTACCAAAACACACCTGTTATAACTGTGTCATCACGTTCGGACATATTGGCGCACTACTCAGCCATATGAGGTCGAATTCCTGCACTAATTTGTGGAAGATTATTTACAATGAAAATGGCATCACTGACGACTTAGTTCTTGAAGATGAACCTAAAGAGGTGAAGGTCGCGTACAAAGATATTTTCAATGCCAGGTCATACGCTTGTAAGCTCTGTCCTGCTAAATTCCAACTGAAACAGTTTATTATGAAACATGTTTTAGATACTCATGAAGATGGACAATCGAGGGTACCTCTCTGTTGTGTCCACTGCCGTAACAGGTTCAAAGATAAGAGTTTACTTAAAAAACATATTCGCAAAGGTGATTGTACAGTTTATATTGCTTGCGATTTGTGTCCAGAAAAGTTCAGAAACGTGCAGGACTTTAACGACCATGCGTTAGCCATCCACGCTGGCAGTTTTGATCAGTCAGATAATCAAAGCAAATGTGTTGACGGTCGACCGACAGACTGTCCTTTGTGCGGAAAGAAAAACAGTAGCTATCCGAATTTAGTGAAACATTTAAAGATAACGCACGCCGAGGAGAAACCTCACTACTGCCAGCATTGCGACTCTAAATACGAACTAGCTACTGAACTAAACAAACACATTTACATGGAGCATTCTGACAGATCTTTAGGCATGCCCACCGAACCAGATATGTCCATAGTGAAGGAAGAAGCGGAGGAGTACCATTACTCCTGTACGGAATGTAATGCCATATTCGAAACTGTCGATGCGTGGACTGATCACCAGGTCGCTGAACATAACCAAGTGGCCCACCACTGTGACCAGTGTGAGAAGAAATTCCTTCGACCTTCAGAGCTGGCAGAGCATAAGAACACTCACTTAAGGGTTAAGTTTTATCCTTGCAGTGTATGCCCCAACTCTTACAGCACTCCACAGAAACTGTCTGAGCATGTGCAGCAGTCACATCCGGGAATCGGCGCGGTCGCGGCGGCCGAGTCGGAGTTCTTCTGCGACATCTGCATTAGAGCATTTAAAAGTCGCCAAGCTTACTCTAACCATATGCGTATACACGCTAAAGTTCCTACCACTAACAGGAAACCCGCTGTTGGTAAAGAAGGGTTCGCGCCTCAAGTTGTAGGAAAACCCATCAAACAGTATCCTATGGTTCAACCTGGTTTTGTATCATTTAAACCTAATTACAACATCCCTAACGCTCCATATTCTTGTGACATTTGTGGTAAAGGATTCATGCACAAGAAAAATATATGGAAACACAAGAAAGTGTTGCATGCCGATATTTTGGTCGATAGACATGATAGTGAAGAGAATACTATGCAAGCTTCCACAGAAGAGGAGGAATTCAACCCAGATGAGAACGGTGGCGTACTGTCAACGCCACAATTTAATAGTTTTAATTTTACGAACTTCCCGAACAATACTCAACAAACGACACCAGAAACAATGCCTTTTTCGTGTGAATTATGTGGCAAACGGTTCCCACTAAAGACAAGTTTATGGAAACATAAACGCGCTAAACACGGTATTGTAAACCCTGGCAGCAGTGGTAGTAACGATACATCCACGCCATCCGCCAGCGGGGAAGGCAGTAGTAGATCTAGCTGCACTATATGTAGAATTACATTTTCAGATAAGAAATCTTATTATCGCCATCGAAAGAATGTCCACAAATCCACCGTTCAAATGTGCAAAATCTGTGGAAAACCCCTGAGTTCAACTTTGGAGTTATACGAGCACTTAAAAGCCGCTCATGCAAGGGAATTACTGGGTTATAACGCAAACCAAGGGTCCAGTAAATCACAGGATATGTCACAAGAGATGGAACCCGATTATGAAAATGATCAGGAGTCTGTCGACCCCAGTGTCGATTACCAAGCGCGTTATCCGTGCGATACTTGTGGCAAACAGTTTGTTGGTTTGCTCGCGTTGCAGAACCATCAATGCATTAATCAGGTTCCATCACAACCACAGACGTTTGACTGTGAGATTTGTCACAAGAGTTACACCTCAATATCTGCACTAAAGAGCCATCGTGGTTGGCATTTACGTTCACCCGATGGAAAAGCAGCCGCCAATAATTCAGGCCTTTGGATGCCTCAGCACAAAGTTACTAGCAAGATAAGTAAACATGAAGTTGTCGACCCCTCACAACTAGCTAAGGTCACACATACTCCTACTCCGCCTCCTGTCAGTGCTAGCGCAGCAAAGAGAAGACTGCCGCCAGAGGTCGAAGTCACCGTTGTAAATCCAAACAAGAAACTACGCTCAGACGACTCTGTCGACCTGGATCAAAGTTCTGGTGCACTAGAGGATAGGTACTGTACGATTTGTGACAAGGAATTTACCAAACGAGCGGCGTATCAGCGCCACATGGACGAAGTACATCAACCGAACTCTGTGTTTTGCCCGGTTTGTGATAAGAGTTTCACTAGGAAGTCCACATTGCTTATTCACATGAAGAAACACTACGAGGGTGGTGAGGGCAGTTCCTCCGCCACAGGTCAAGGGGACGATGATTTCTCCTGTGATTTGTGTGGCGCTCAGTACGACAACGATCAGGCGTTGAGGGCGCACCGAGCGAGGCATCATGGGGAAGACGAAGAGTCGGCAGAAGAGAGTGACGACGGTAATGTCCCTATAGCCCAGCCCGGTGAATTCACATGTGCGCAATGTGGCGATGGCGTCGCCACCCCCAGGGATCTCATCGCCCATCGCACAATGCACGCTACTCCCACCAAATTCTTCTGTAACATTTGTAAAGTGTACTTCGCCCGGGCGCTCGACCTGTCCTCGCACACTCGGGCGCGACACGCTGACAACGAAAAGGTATTCTTCCCGTGTGCCATGTGCGACAGGTTCTACATGAACAAGAAGAGTTTACAGCGGCACATCGAGATGGCTCACTGA
Protein Sequence: MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLALKIKDCVSVQINENDDLPTNVCRKCVDNVNNWHVFKNVCERTQNKLLSLKDGSQLEEVKIKSEPLSDEAYDDGVVIDGSYPVIENAGFSNKVQPEGPPILASLGLTPRSDKKCVDPRMDWHRVHAILDMVQDNEVIDSLQTKEECDVLQHSDHDSETEAELQPEIDDCYVDCKSGYICKNKKVLSKVPKLSTSVNNARVKEAFKLRKRKSDVRKHCSRPKNAWQLLFTDDLLELIVASTNDNIVTNGKSFTESTSVSEIKTLIGILYLHGIMRPTHQQCSDLWNSDCGVPCVRKVMKYERFKFLLQNISFDKEDDDSIIQFDIMKRMRKVFEIFAMNCRTSHEIENVAVIDEIIVPVYGPCPFRYDIDKKPLKRGIKMVLLVDSSTFYMSNLDVITDPYFGAEEITKKLVQHLAGSGRSIVMDSWFTSSSLIDSLKNEYQLYSIAALNPNSTMIPPLFLSQYRKCRSFMSAFIDHEVSLTSYVNAEGKSVTVLTNEPRYYRKGHINHTTVVSVYKKNQSAVEIVDVIMNYYTTMQHTNDWTLSLFFTLLNIASVNAQVVWCSQNTHVTQRRLFIKDLALSLLEPDEERMMISPILDLEQMKNKFSIGAESENNEEDEEEMNEPAQNFPKMPHMPEVSITVMRPTGETLHARQGIHQLASKLCLVCGRSYRYSHNARRHELTAHSFDRYTNKITPKKTLNHLQPKLRPNPFNPKARMMPNPISHKMQFLNKNISAKIMPINKVITPQKPIPIKTSKTTTTQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEILNSGPESPETLISEPEIASFQVEAILTEPDADAYDDPQQGDEDVDEDMQNNQSQNYDTVDMDSENEIEIARQQGVEHEGDDNVDGDENMDHDDDNNMEGGQSDNEKDGHDDTAESQENMEEEDSVDIKAEGEMKDEEEDQDERDHEEIEMNHNENEDDDDDDLPISLAPVVEINEGLQVNSFNNEVNEEDDELDETADGDTNETIDEEEPVKELDPDKTYVTKTQRDFIQKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRSNSCTNLWKIIYNENGITDDLVLEDEPKEVKVAYKDIFNARSYACKLCPAKFQLKQFIMKHVLDTHEDGQSRVPLCCVHCRNRFKDKSLLKKHIRKGDCTVYIACDLCPEKFRNVQDFNDHALAIHAGSFDQSDNQSKCVDGRPTDCPLCGKKNSSYPNLVKHLKITHAEEKPHYCQHCDSKYELATELNKHIYMEHSDRSLGMPTEPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCPNSYSTPQKLSEHVQQSHPGIGAVAAAESEFFCDICIRAFKSRQAYSNHMRIHAKVPTTNRKPAVGKEGFAPQVVGKPIKQYPMVQPGFVSFKPNYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADILVDRHDSEENTMQASTEEEEFNPDENGGVLSTPQFNSFNFTNFPNNTQQTTPETMPFSCELCGKRFPLKTSLWKHKRAKHGIVNPGSSGSNDTSTPSASGEGSSRSSCTICRITFSDKKSYYRHRKNVHKSTVQMCKICGKPLSSTLELYEHLKAAHARELLGYNANQGSSKSQDMSQEMEPDYENDQESVDPSVDYQARYPCDTCGKQFVGLLALQNHQCINQVPSQPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKISKHEVVDPSQLAKVTHTPTPPPVSASAAKRRLPPEVEVTVVNPNKKLRSDDSVDLDQSSGALEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLIHMKKHYEGGEGSSSATGQGDDDFSCDLCGAQYDNDQALRAHRARHHGEDEESAEESDDGNVPIAQPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00017541;
90% Identity: iTF_00758469;
80% Identity: -