Cnig026820.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- SCAND3
- Assembly
- GCA_958510845.1
- Location
- OY294033.1:30266769-30270156[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.029 64 4.6 0.0 19 44 179 204 173 211 0.86 2 7 4 8.7e+03 -2.2 0.0 20 43 265 288 254 293 0.77 3 7 0.0081 18 6.4 0.2 19 48 292 321 277 324 0.88 4 7 0.3 6.6e+02 1.4 0.1 12 44 461 492 458 497 0.82 5 7 0.00065 1.4 9.9 0.0 21 45 496 520 491 523 0.89 6 7 0.61 1.3e+03 0.4 0.0 25 44 699 718 691 726 0.86 7 7 0.0053 12 7.0 0.1 20 50 750 780 733 783 0.85
Sequence Information
- Coding Sequence
- ATGGAATTGGAGTGCCGGACGTGTTTGAAAATTACCAAGAACCTCTGCGACTTATTTTCCAACGACTTGCCGCACAAAATCGAAGCGATTTCTTCCGTTGAGattttggAAGGCGATGGATTTTCTACCAAAATATGCGACCTGTGTGAGCGAAACGTTCACTTGTTGTACGACTTTCGCAATATAATTCGACGGAGCAACGTGATGCTGCAACAGCGCAGCATGAAACAGGAAAGTAATGAAAATGTAGACCACCAAACTGAAGAATATGAAACCGTGGGTATCGAAACTAAATTGGAACCCATAGTTGAAGTAGACCTTGTGTATCTGAACGAAGCCATTAAGAAGGAAGTCGAAACTGGAAAAGAAAACAAAGATGAGAAAAAAGTCTACACATGCAAAGACTGCGAATTTACAactcaaaattataattctCTGCGAACACATAAAAAGGTTCATAAGGAAGTAGTGCGAACCGTATGTACCACTTGCGGGAAGTCTGTCATAAAAGCTTACTTACGAAGTCATCTCTTGTCTCATTCCGAAACGCCGATTTCTTGCGAAGTCTGCGGAAAGATGGTTAAAAATATTGGATGTTTAAAGGCACATATGTTTATCCACAATGGCCAGCCGTTGCAATGCTCCGAGTGCGGGAAGATTTATAAAAATCGGCCGAGATACTACGCGCATAAACGAAGACACGCACTTGGGGATGTTAAAACAGTCGAGTGCTCAATCTGTACGAAGCTGTTTTTCGATAAAGAAACGCTAACCAAACACATCAGGAGTCACACGGGCGAGAGGCCTTTTCCTTGCGAGTACTGCAAAAAAGGCTTTTCAAGCAGTCATGCTCTAAAGACCCACAAGAGAAAGCATACAAACGAAAAACCTTATGCATGTGATTTCTGCGAAATGGCATTTCCACAAAGAGTTTCGCTCCGAACGCATTTGAAGTCGAAACATCCGGAGGGTTGCGATTTGCCACACAAAATCGAAACGATTTCGTCGATCCAGATTTTGGTCAACGATCAATTCCCTTCAAAAATTTGTCATTCCTGCGTGACGAACGTAGAATTGCTGTACGATTTTCGTGGTATCGTAAGAAGAAGCAACATGATTTTGGAAAGCCGTGTCTGCAACGCTCAAAATGAGGTAGCCGAACTCCCAGACACCGAATTAATTCAAATCGACGAAATTAAAATGGAATCCGAAATcgaaaatttagattttgacGATCTTGTCGAAAGTAAAGAAGAAATAACAAATGAAGAAGATTTGACTAGTCATTCAATGATTCGGAAATCCAATCGAGGAAAGAAAGGCAAGGTTTACAATTGTACGGAGTGCGATTTCACCACCGAGCAGTATAATTCCCTCAGAACTCACCGCAAGCGACACAAAAACAGACAAGAACTGAGATCTATTTGCAATATTTGCGGGAAATCAATCACCACCGATAATTTAAGCAAGCACCTGTCCAATCATACCGACACCCCGGTCACTTGTAAAATTTGCGGAAAGGTGGTTAAGCACAAGGAGAGCTTACGGGGCCACATGTACATGCATAAAGGCATTACACTTCAGTGCACTTTCTGTGGAAAGATTTTTCATAATCGGCAGTCCTACTACAAACATCTCCAAAGAcacaaaatacaCTGTTCTACGATGGAAAAAAGTAACATGAAAACGAAGTTCTACGAGTGCCTTTCGGAGAAACCGCAAAAGAGTAACAGTTTTCAGATAAGTACAGAAAAATATCGCAAACTAATTGAAGACGTAAAATCGGCTAAAAGTGGAATTAAAAAGGAAAGTCGAGATTATTGGCTACTACGTCACTACGATGTCGTAACAACAAACGGAAGAGAACAACTTTTTGTTCCGTCCGAGAACGAGCAAGTCCTCTATTATATTACCAGCGAAGAattgtttgatattttatatGAGACGCACGAAACAATTGGCCACGGTGGACGAGATAAAATGAAGAAAGAAATTGCTCAACGTTACAAGAACATAACTTTACTCGACATACAGACTTTTTTAAATCTATGCCAGCCTTGTGTACAAAAAAGGAAAAATGGCGGAGCCAAGACCGTGAAATGTCCCATGTGTGAGAAGCTTTTCCATGAGAAAAAATCGTTAACGAAACACATACGGTCTCACACGGGAGAGCGACCCTACCCGTGTGAGTACTGCAAGAAAGGATTTTCCAGTCCGTACGCACTAAAAACTCACGTAAGGCAACACACCAACGAGAAACCCTTTGCTTGTGATTTCTGCGACATGGCATTCCCGCAGCGAGTTTCGCTTCGCACACATTTGAAATCGAAGCATCCTGATAAAACTTCGGAACCAAGTAGTTAA
- Protein Sequence
- MELECRTCLKITKNLCDLFSNDLPHKIEAISSVEILEGDGFSTKICDLCERNVHLLYDFRNIIRRSNVMLQQRSMKQESNENVDHQTEEYETVGIETKLEPIVEVDLVYLNEAIKKEVETGKENKDEKKVYTCKDCEFTTQNYNSLRTHKKVHKEVVRTVCTTCGKSVIKAYLRSHLLSHSETPISCEVCGKMVKNIGCLKAHMFIHNGQPLQCSECGKIYKNRPRYYAHKRRHALGDVKTVECSICTKLFFDKETLTKHIRSHTGERPFPCEYCKKGFSSSHALKTHKRKHTNEKPYACDFCEMAFPQRVSLRTHLKSKHPEGCDLPHKIETISSIQILVNDQFPSKICHSCVTNVELLYDFRGIVRRSNMILESRVCNAQNEVAELPDTELIQIDEIKMESEIENLDFDDLVESKEEITNEEDLTSHSMIRKSNRGKKGKVYNCTECDFTTEQYNSLRTHRKRHKNRQELRSICNICGKSITTDNLSKHLSNHTDTPVTCKICGKVVKHKESLRGHMYMHKGITLQCTFCGKIFHNRQSYYKHLQRHKIHCSTMEKSNMKTKFYECLSEKPQKSNSFQISTEKYRKLIEDVKSAKSGIKKESRDYWLLRHYDVVTTNGREQLFVPSENEQVLYYITSEELFDILYETHETIGHGGRDKMKKEIAQRYKNITLLDIQTFLNLCQPCVQKRKNGGAKTVKCPMCEKLFHEKKSLTKHIRSHTGERPYPCEYCKKGFSSPYALKTHVRQHTNEKPFACDFCDMAFPQRVSLRTHLKSKHPDKTSEPSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271618;
- 90% Identity
- iTF_00271618;
- 80% Identity
- iTF_00271618;