Cnig026820.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- SCAND3
- Assembly
- GCA_958510845.1
- Location
- OY294033.1:30266769-30270156[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.018 0.96 10.9 3.0 1 23 131 153 131 153 0.98 2 14 0.082 4.3 8.8 0.2 2 23 160 180 159 180 0.95 3 14 0.001 0.054 14.8 0.3 2 23 186 207 185 207 0.96 4 14 0.0014 0.074 14.4 1.1 2 23 213 234 212 234 0.97 5 14 5.8e-05 0.003 18.7 0.9 2 23 243 264 242 264 0.97 6 14 1.9e-05 0.00098 20.3 4.0 1 23 270 292 270 292 0.98 7 14 0.00062 0.032 15.5 0.4 1 23 298 321 298 321 0.97 8 14 0.005 0.26 12.6 2.9 1 23 444 466 444 466 0.98 9 14 0.0091 0.47 11.8 0.3 3 23 476 495 474 495 0.95 10 14 4.2e-05 0.0022 19.2 1.0 2 23 501 522 500 522 0.97 11 14 0.003 0.16 13.3 4.5 2 23 528 549 527 549 0.97 12 14 0.00039 0.02 16.1 2.7 2 23 700 721 699 721 0.98 13 14 2.1e-06 0.00011 23.3 0.5 1 23 727 749 727 749 0.98 14 14 0.00023 0.012 16.8 0.5 1 23 755 778 755 778 0.96
Sequence Information
- Coding Sequence
- ATGGAATTGGAGTGCCGGACGTGTTTGAAAATTACCAAGAACCTCTGCGACTTATTTTCCAACGACTTGCCGCACAAAATCGAAGCGATTTCTTCCGTTGAGattttggAAGGCGATGGATTTTCTACCAAAATATGCGACCTGTGTGAGCGAAACGTTCACTTGTTGTACGACTTTCGCAATATAATTCGACGGAGCAACGTGATGCTGCAACAGCGCAGCATGAAACAGGAAAGTAATGAAAATGTAGACCACCAAACTGAAGAATATGAAACCGTGGGTATCGAAACTAAATTGGAACCCATAGTTGAAGTAGACCTTGTGTATCTGAACGAAGCCATTAAGAAGGAAGTCGAAACTGGAAAAGAAAACAAAGATGAGAAAAAAGTCTACACATGCAAAGACTGCGAATTTACAactcaaaattataattctCTGCGAACACATAAAAAGGTTCATAAGGAAGTAGTGCGAACCGTATGTACCACTTGCGGGAAGTCTGTCATAAAAGCTTACTTACGAAGTCATCTCTTGTCTCATTCCGAAACGCCGATTTCTTGCGAAGTCTGCGGAAAGATGGTTAAAAATATTGGATGTTTAAAGGCACATATGTTTATCCACAATGGCCAGCCGTTGCAATGCTCCGAGTGCGGGAAGATTTATAAAAATCGGCCGAGATACTACGCGCATAAACGAAGACACGCACTTGGGGATGTTAAAACAGTCGAGTGCTCAATCTGTACGAAGCTGTTTTTCGATAAAGAAACGCTAACCAAACACATCAGGAGTCACACGGGCGAGAGGCCTTTTCCTTGCGAGTACTGCAAAAAAGGCTTTTCAAGCAGTCATGCTCTAAAGACCCACAAGAGAAAGCATACAAACGAAAAACCTTATGCATGTGATTTCTGCGAAATGGCATTTCCACAAAGAGTTTCGCTCCGAACGCATTTGAAGTCGAAACATCCGGAGGGTTGCGATTTGCCACACAAAATCGAAACGATTTCGTCGATCCAGATTTTGGTCAACGATCAATTCCCTTCAAAAATTTGTCATTCCTGCGTGACGAACGTAGAATTGCTGTACGATTTTCGTGGTATCGTAAGAAGAAGCAACATGATTTTGGAAAGCCGTGTCTGCAACGCTCAAAATGAGGTAGCCGAACTCCCAGACACCGAATTAATTCAAATCGACGAAATTAAAATGGAATCCGAAATcgaaaatttagattttgacGATCTTGTCGAAAGTAAAGAAGAAATAACAAATGAAGAAGATTTGACTAGTCATTCAATGATTCGGAAATCCAATCGAGGAAAGAAAGGCAAGGTTTACAATTGTACGGAGTGCGATTTCACCACCGAGCAGTATAATTCCCTCAGAACTCACCGCAAGCGACACAAAAACAGACAAGAACTGAGATCTATTTGCAATATTTGCGGGAAATCAATCACCACCGATAATTTAAGCAAGCACCTGTCCAATCATACCGACACCCCGGTCACTTGTAAAATTTGCGGAAAGGTGGTTAAGCACAAGGAGAGCTTACGGGGCCACATGTACATGCATAAAGGCATTACACTTCAGTGCACTTTCTGTGGAAAGATTTTTCATAATCGGCAGTCCTACTACAAACATCTCCAAAGAcacaaaatacaCTGTTCTACGATGGAAAAAAGTAACATGAAAACGAAGTTCTACGAGTGCCTTTCGGAGAAACCGCAAAAGAGTAACAGTTTTCAGATAAGTACAGAAAAATATCGCAAACTAATTGAAGACGTAAAATCGGCTAAAAGTGGAATTAAAAAGGAAAGTCGAGATTATTGGCTACTACGTCACTACGATGTCGTAACAACAAACGGAAGAGAACAACTTTTTGTTCCGTCCGAGAACGAGCAAGTCCTCTATTATATTACCAGCGAAGAattgtttgatattttatatGAGACGCACGAAACAATTGGCCACGGTGGACGAGATAAAATGAAGAAAGAAATTGCTCAACGTTACAAGAACATAACTTTACTCGACATACAGACTTTTTTAAATCTATGCCAGCCTTGTGTACAAAAAAGGAAAAATGGCGGAGCCAAGACCGTGAAATGTCCCATGTGTGAGAAGCTTTTCCATGAGAAAAAATCGTTAACGAAACACATACGGTCTCACACGGGAGAGCGACCCTACCCGTGTGAGTACTGCAAGAAAGGATTTTCCAGTCCGTACGCACTAAAAACTCACGTAAGGCAACACACCAACGAGAAACCCTTTGCTTGTGATTTCTGCGACATGGCATTCCCGCAGCGAGTTTCGCTTCGCACACATTTGAAATCGAAGCATCCTGATAAAACTTCGGAACCAAGTAGTTAA
- Protein Sequence
- MELECRTCLKITKNLCDLFSNDLPHKIEAISSVEILEGDGFSTKICDLCERNVHLLYDFRNIIRRSNVMLQQRSMKQESNENVDHQTEEYETVGIETKLEPIVEVDLVYLNEAIKKEVETGKENKDEKKVYTCKDCEFTTQNYNSLRTHKKVHKEVVRTVCTTCGKSVIKAYLRSHLLSHSETPISCEVCGKMVKNIGCLKAHMFIHNGQPLQCSECGKIYKNRPRYYAHKRRHALGDVKTVECSICTKLFFDKETLTKHIRSHTGERPFPCEYCKKGFSSSHALKTHKRKHTNEKPYACDFCEMAFPQRVSLRTHLKSKHPEGCDLPHKIETISSIQILVNDQFPSKICHSCVTNVELLYDFRGIVRRSNMILESRVCNAQNEVAELPDTELIQIDEIKMESEIENLDFDDLVESKEEITNEEDLTSHSMIRKSNRGKKGKVYNCTECDFTTEQYNSLRTHRKRHKNRQELRSICNICGKSITTDNLSKHLSNHTDTPVTCKICGKVVKHKESLRGHMYMHKGITLQCTFCGKIFHNRQSYYKHLQRHKIHCSTMEKSNMKTKFYECLSEKPQKSNSFQISTEKYRKLIEDVKSAKSGIKKESRDYWLLRHYDVVTTNGREQLFVPSENEQVLYYITSEELFDILYETHETIGHGGRDKMKKEIAQRYKNITLLDIQTFLNLCQPCVQKRKNGGAKTVKCPMCEKLFHEKKSLTKHIRSHTGERPYPCEYCKKGFSSPYALKTHVRQHTNEKPFACDFCDMAFPQRVSLRTHLKSKHPDKTSEPSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00272110;
- 90% Identity
- iTF_00272110;
- 80% Identity
- iTF_00272110;