Basic Information

Insect: Cantharis nigra
Gene Symbol: -
Assembly: GCA_958510845.1
Location: OY294029.1:51910476-51912753[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0019 0.097 14.0 0.3 3 23 22 42 21 42 0.95

2 14 2.8e-05 0.0015 19.7 1.3 1 21 110 130 110 131 0.95

3 14 0.0028 0.14 13.5 0.6 1 23 139 161 139 161 0.98

4 14 0.00056 0.029 15.6 1.1 1 23 167 189 167 189 0.97

5 14 0.00063 0.033 15.5 2.9 1 23 195 217 195 217 0.93

6 14 0.016 0.85 11.0 4.8 1 23 223 245 223 245 0.99

7 14 8.7e-05 0.0046 18.2 0.5 3 23 408 428 407 428 0.96

8 14 0.17 8.7 7.9 3.1 1 23 443 466 443 466 0.96

9 14 6.5e-06 0.00034 21.7 0.5 2 23 471 493 470 493 0.96

10 14 0.0012 0.065 14.5 0.3 1 20 503 522 503 524 0.93

11 14 0.0002 0.011 17.0 0.3 1 23 532 554 532 554 0.98

12 14 0.00085 0.044 15.1 1.1 1 23 560 582 560 582 0.95

13 14 0.00055 0.029 15.7 0.6 1 23 588 610 588 610 0.94

14 14 2.5 1.3e+02 4.1 2.4 1 23 616 638 616 638 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0019	0.097	14.0	0.3	3	23	22	42	21	42	0.95
2	14	2.8e-05	0.0015	19.7	1.3	1	21	110	130	110	131	0.95
3	14	0.0028	0.14	13.5	0.6	1	23	139	161	139	161	0.98
4	14	0.00056	0.029	15.6	1.1	1	23	167	189	167	189	0.97
5	14	0.00063	0.033	15.5	2.9	1	23	195	217	195	217	0.93
6	14	0.016	0.85	11.0	4.8	1	23	223	245	223	245	0.99
7	14	8.7e-05	0.0046	18.2	0.5	3	23	408	428	407	428	0.96
8	14	0.17	8.7	7.9	3.1	1	23	443	466	443	466	0.96
9	14	6.5e-06	0.00034	21.7	0.5	2	23	471	493	470	493	0.96
10	14	0.0012	0.065	14.5	0.3	1	20	503	522	503	524	0.93
11	14	0.0002	0.011	17.0	0.3	1	23	532	554	532	554	0.98
12	14	0.00085	0.044	15.1	1.1	1	23	560	582	560	582	0.95
13	14	0.00055	0.029	15.7	0.6	1	23	588	610	588	610	0.94
14	14	2.5	1.3e+02	4.1	2.4	1	23	616	638	616	638	0.95

Sequence Information

Coding Sequence: ATGGTCgacgaaaatgttaaaaccaAAAATGTCGGTAAGAGGAAACCGGCGAAAGAAAATTCCTGTCTGGACTGTGGGAAAGTCTTCAAGtacaagaaaattttggaaaagcaTGCGGCCATGCACAAGGGCGAGCACCCCTACTGGTGTAAAATCTGCATGCAGAATTTTGCTTCGCTCGAGGAAAAGAAACTGCACGGGTTGAACGTTCACCCAATCAAGGTCAAAAAGCGAAAGTGCAAATTGTGTCCGGATCTGCTGTTTGAAACGAAAGATGAGTTTCTTCTTCACAACACTGTTCTTCATGCCGACAATTTATACCCCTGTTTTATGTGCAGCGACTGCGCGAAGCAGTTCAAAACGAAAAGCGAACTCACTCACCACATAAACTCGAAATGTGGGACTATAAAGCTGTTCCAGTGCAAAGTGTGCAACTTGAATTTAATGACGGCGGGTTCGTTACACAACCACATGCTGATCCACAACGGTGAACGTTCCCACATGTGCGGTTACTGTGGGAAAAGATTTTTGACGATCGGACAACTGCAGGTACACGAAAGGACGCACACCCAAGACAAAGCGTTTGTTTGTGagGTCTGCGGGAAAGGTTTCTGTCACCGGCAGAGTTTGATCACACACAGTACGTTGCATACGGGGGTAAAGCCGTTCCAGTGCGAAAATTGCAGCCACGCGTTTAGCTGTGTCGGAAATTTGATGAAGCACAGGCGGACGCATCCCGACACTTGCGGTTCCACCCCCGTGACCACTCACAGGGTCAACAATCCTTCTacgaaaatgaaaattcaaattaacacTCCGAAGTGTGTGAAGCTGAAGACCTTGCAGAAGGAACAACAGTTGGAAATGAAATTGGCAGCTTATAAAGAAAAACTGGAAAAAACCAAGCAGGACAACGAAAACAAGAAGGAAGTCGTAACCGGAAGCGAGTATGTGGTGAAGGAAGAAGTGGTCGAAGCTTCCTATGCGGGTCTGGAAATTAAAGTTGAAGATTCTgagTTGGAAAAACCAGAGAAACCCCTTGAAACCGTTACGGAAGATGCAATAAAATGCGAGAAAGAGGCATCCTCTGATGCCGAGGACAAAAAAGACATTAGAAAAGTGCGGAAGGTGAAGATAAGGTTCAAAGGTGAAAGGGAATCCAAAGAAGAGTTCCAAAACTTCCTAAAAGAGCGAGATTTAGAAAACCTGTCCGAAGCGCCATGTAAAGACTGCGGTAAGCTTTACACGAACTGGAGGTGGCTTCGGAAACATGAAAAGGAACACGAAAAGGGAAGTCTTTCGAAGGCAAAACTGAAGGACGCTCGGTTTAATTGCAAGTCCTGTGGAGTTAGATTCGAAACGAAAGAGGAACACCGGCTTCATCAAAAGAAGGAACACGCGGATATATTAACCTGCAATGATTGCGAGAAGGTTTTCTCTAACATGGATTCCTTGAGGTCCCACCAGAATATTTACCACAAGGGGCAACCACGGAAGCTGTACCTATACATCTGCGAGAAGTGCGGCCTACAGTTTCGACAAAAGGCGATGCTGTTGCACCACGAAAGCAGCAATTGCGGAACAGGACCGATTTACCCCTGCGAAGTGTGCGGGAAGGGTTTCAGCAGCATTTACACCCGGACTTCTCATCTGAAAATTCACGATCCCAAGAAGAAGTTTCTGTGCAAATTCTGCGGAAAGGAGTTTCGGTGGAAAGGGCAGCTGAAGATTCACGAGCGCAGtcacaccggcgagaaaccattcaAGTGTTTGTATTGCCCTAAAGCGTTCGCGTATCGCGAGAGTTTGGTGACGCACAGCAGCCTGCACACGGGAATTAAACCGCACGTTTGCCGTGCGTGCGGATCGAGGTTTTCTTGCGTCGGAAATTTGATCAAGCATCGGGTAACGCACGCAAATTCCTGCGGGACGTGGTACAACAAACAAGAATGA
Protein Sequence: MVDENVKTKNVGKRKPAKENSCLDCGKVFKYKKILEKHAAMHKGEHPYWCKICMQNFASLEEKKLHGLNVHPIKVKKRKCKLCPDLLFETKDEFLLHNTVLHADNLYPCFMCSDCAKQFKTKSELTHHINSKCGTIKLFQCKVCNLNLMTAGSLHNHMLIHNGERSHMCGYCGKRFLTIGQLQVHERTHTQDKAFVCEVCGKGFCHRQSLITHSTLHTGVKPFQCENCSHAFSCVGNLMKHRRTHPDTCGSTPVTTHRVNNPSTKMKIQINTPKCVKLKTLQKEQQLEMKLAAYKEKLEKTKQDNENKKEVVTGSEYVVKEEVVEASYAGLEIKVEDSELEKPEKPLETVTEDAIKCEKEASSDAEDKKDIRKVRKVKIRFKGERESKEEFQNFLKERDLENLSEAPCKDCGKLYTNWRWLRKHEKEHEKGSLSKAKLKDARFNCKSCGVRFETKEEHRLHQKKEHADILTCNDCEKVFSNMDSLRSHQNIYHKGQPRKLYLYICEKCGLQFRQKAMLLHHESSNCGTGPIYPCEVCGKGFSSIYTRTSHLKIHDPKKKFLCKFCGKEFRWKGQLKIHERSHTGEKPFKCLYCPKAFAYRESLVTHSSLHTGIKPHVCRACGSRFSCVGNLIKHRVTHANSCGTWYNKQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00268939; iTF_00273028; iTF_00270289; iTF_01294193; iTF_01292424;
90% Identity: iTF_00268939; iTF_00273028; iTF_00270289;
80% Identity: -