Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:1673217-1675456[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0012 0.035 15.4 0.4 2 23 21 42 21 42 0.95

2 14 2.4 71 5.0 0.3 2 23 79 102 79 102 0.89

3 14 5.2e-05 0.0015 19.7 1.3 1 21 110 130 110 131 0.95

4 14 0.0051 0.15 13.4 0.6 1 23 139 161 139 161 0.98

5 14 0.001 0.03 15.6 1.1 1 23 167 189 167 189 0.97

6 14 0.0012 0.034 15.5 2.9 1 23 195 217 195 217 0.93

7 14 0.03 0.87 11.0 4.8 1 23 223 245 223 245 0.99

8 14 0.00046 0.013 16.7 0.7 3 23 413 433 412 433 0.96

9 14 1.2e-05 0.00035 21.7 0.5 2 23 476 498 475 498 0.96

10 14 0.0023 0.066 14.5 0.3 1 20 508 527 508 529 0.93

11 14 0.00038 0.011 17.0 0.3 1 23 537 559 537 559 0.98

12 14 0.0016 0.045 15.0 1.1 1 23 565 587 565 587 0.95

13 14 0.001 0.029 15.6 0.6 1 23 593 615 593 615 0.94

14 14 4.7 1.3e+02 4.1 2.4 1 23 621 643 621 643 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0012	0.035	15.4	0.4	2	23	21	42	21	42	0.95
2	14	2.4	71	5.0	0.3	2	23	79	102	79	102	0.89
3	14	5.2e-05	0.0015	19.7	1.3	1	21	110	130	110	131	0.95
4	14	0.0051	0.15	13.4	0.6	1	23	139	161	139	161	0.98
5	14	0.001	0.03	15.6	1.1	1	23	167	189	167	189	0.97
6	14	0.0012	0.034	15.5	2.9	1	23	195	217	195	217	0.93
7	14	0.03	0.87	11.0	4.8	1	23	223	245	223	245	0.99
8	14	0.00046	0.013	16.7	0.7	3	23	413	433	412	433	0.96
9	14	1.2e-05	0.00035	21.7	0.5	2	23	476	498	475	498	0.96
10	14	0.0023	0.066	14.5	0.3	1	20	508	527	508	529	0.93
11	14	0.00038	0.011	17.0	0.3	1	23	537	559	537	559	0.98
12	14	0.0016	0.045	15.0	1.1	1	23	565	587	565	587	0.95
13	14	0.001	0.029	15.6	0.6	1	23	593	615	593	615	0.94
14	14	4.7	1.3e+02	4.1	2.4	1	23	621	643	621	643	0.95

Sequence Information

Coding Sequence: ATGGTCGACGAAAGTGTAAAAATAAAAAATGTCGGTAAAAGAAAGACGACGAAGGAGAATTCCTGTCAGGACTGTGGAAAAGTCTTCAAATACAAGAAAATTTTGGAAAAACACGCAGCTATGCACAAGGGAGAGCATCCTTATTGGTGTAAACTTTGCATGCAGAATTTTGCGTCTTTGGAGGAGAAGAAACTCCACAGTTTGACTCTTCACCCTATCAAGGTTAAAAAGCGAAAGTGTAAGCTGTGCCCCGATTTAACGTTTGAAACGAAAGACGAGCTCCTTCTCCACAACACCGTTCTTCACGCCGACAATTTAAACCCTTGCTTTATGTGCAGCGACTGTGCAAAACAGTTCAAAACGAAGAGCGAACTCACCCACCACATCAACTCGAAATGTGGAACTATAAAATTGTTCCAGTGCAAAGTTTGCAATTTGAACTTGATGACGGCGGGTTCGTTACACAACCACATGCTGATCCACAACGGCGAACGTTCTCACATGTGCGGTTACTGTGGTAAACGATTTTTGACAATCGGACAACTGCAGGTACACGAAAGGACGCACACCCAAGACAAGGCATTTGTTTGTGAGGTTTGTGGGAAAGGTTTTTGTCACCGTCAGAGTTTGATCACGCACAGCACGCTGCATACGGGGGTGAAACCATTCCAGTGCGAAAATTGCAGTCACGCATTTAGTTGCGTCGGAAATTTGATGAAACATAGGCGCACGCATCCCGATACTTGCGGTTCCACCCCCGTGACCACTCACAGGGTTAACAATCCTTCGACGAAAATGAAAATCCAGATTAACACGCCCAAGTGTGTGAAGCTGAAGACGTTGCAGAAGGAACAGCAGTTGGAAATGAAATTGGCGGCGTATAAGGAGAAACTTGAGAAAACGAGGCAGAGCAGTGTGAAGAAGGAGGGCGTCAGAAGTGGGACTAATTTGATGGTGAAAGAAGAAGCGGTTGAAGCTTCCTGTGAGGACGTTAAAGTTGAAGATTGTGAGCTGGAACAAACAGAAAAATATCTTGAAAACATATCAGAAGATGCGGTAAAATGCGAGAAGGACGAAAAGACATCCAAAAGCGACGATTTGTCCGACGTGGACGACAAAAAAGACATTAGAAAAGTGCGAAAAGTAAAAATAAAATTCAAAAGTGAAAAGGAATCCAAGGAGGAATTCCAAAACTTCCTGAAAGAACGAGATTTGGAAAACGTGTCCGAAGCGCCGTGCAAGCAGTGTGGTAAACTCTACACCAACTGGAGGTGGCTGAGGAAACACGAGAAGGAACACGAAAAGGGAAGCCTTCCAAAAACGAAACTGAAAGACTCGCGTTTCATCTGTAAGTGCTGTGCACGTCGATTTGAGACGAAAGAAGAGCACAGGCTTCACCAAAAAAAGGAACACGTTGATATTTTGACATGCAATGATTGCGAGAAGGTCTTCTCCAACATGGATTCCTTACGGTCCCACCAAAACATTTACCACAAAGGGCAGCCACGCAAAGTTTACCTGTACATCTGCGAAAAATGCGGCCTTCAGTTTCGTCAGAAGGCGATGCTGTTGCACCATGAGAGCAGCAATTGCGGAACGGGTCCAATTTATCCGTGCGAAGTGTGTGGGAAAGGCTTCAGCAGCATTTACACTCGGACTTCCCACTTGAAAATTCACGACCCTAAGAAGAAGTTTTTGTGTAAATTTTGCGGTAAGGAGTTTAGGTGGAAAGGGCAGCTTAAAATTCACGAACGCAGTCACACTGGAGAAAAACCTTTCAAGTGCTTGTATTGCCCCAAAGCCTTCGCGTATCGCGAGAGTTTGGTGACTCACAGCAGTTTGCATACAGGAATTAAACCGCACGTTTGTCGAGCGTGCGGCTCGCGGTTTTCTTGCGTCGGAAATTTGATCAAACATCGCGTAACGCACGCGAATTCGTGCGGGACTTGGTACAACAAAAACAACAAGCAAGAATGA
Protein Sequence: MVDESVKIKNVGKRKTTKENSCQDCGKVFKYKKILEKHAAMHKGEHPYWCKLCMQNFASLEEKKLHSLTLHPIKVKKRKCKLCPDLTFETKDELLLHNTVLHADNLNPCFMCSDCAKQFKTKSELTHHINSKCGTIKLFQCKVCNLNLMTAGSLHNHMLIHNGERSHMCGYCGKRFLTIGQLQVHERTHTQDKAFVCEVCGKGFCHRQSLITHSTLHTGVKPFQCENCSHAFSCVGNLMKHRRTHPDTCGSTPVTTHRVNNPSTKMKIQINTPKCVKLKTLQKEQQLEMKLAAYKEKLEKTRQSSVKKEGVRSGTNLMVKEEAVEASCEDVKVEDCELEQTEKYLENISEDAVKCEKDEKTSKSDDLSDVDDKKDIRKVRKVKIKFKSEKESKEEFQNFLKERDLENVSEAPCKQCGKLYTNWRWLRKHEKEHEKGSLPKTKLKDSRFICKCCARRFETKEEHRLHQKKEHVDILTCNDCEKVFSNMDSLRSHQNIYHKGQPRKVYLYICEKCGLQFRQKAMLLHHESSNCGTGPIYPCEVCGKGFSSIYTRTSHLKIHDPKKKFLCKFCGKEFRWKGQLKIHERSHTGEKPFKCLYCPKAFAYRESLVTHSSLHTGIKPHVCRACGSRFSCVGNLIKHRVTHANSCGTWYNKNNKQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00271663;
90% Identity: iTF_01294193;
80% Identity: -