Cfla027193.1
Basic Information
- Insect
- Cantharis flavilabris
- Gene Symbol
- -
- Assembly
- GCA_949152465.1
- Location
- OX424439.1:2061141-2062819[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.071 2.8e+02 2.8 0.1 20 43 147 169 142 173 0.73 2 7 0.00011 0.45 11.8 0.1 21 44 174 197 171 202 0.92 3 7 0.019 74 4.7 0.3 23 40 203 222 198 231 0.74 4 7 0.0079 31 5.9 0.0 21 48 284 311 278 316 0.92 5 7 0.039 1.6e+02 3.6 0.2 14 44 321 350 308 354 0.70 6 7 0.00096 3.8 8.8 0.1 22 45 355 378 352 383 0.90 7 7 0.00016 0.64 11.3 0.2 18 48 464 494 454 497 0.89
Sequence Information
- Coding Sequence
- ATGGAATTTGAATGCCGAACGTGTTTAAAATTGTCTACCAATGTGAGCCACGTATATTCAGATGATTTACCTCATAAAATAGAAACGATAGCTTCGGTCGAGGTTTTGGAAAGCGACAAGTTTTCGTCTAAAATATGCGAAGAATGCTTAACCAACGTGAACCAGATGTACGAATTTCGTAAAGTCATCAGATCGAGTAACATGATTTTAATGAAACGTAGCATGAAGGAAGAGGAGGCGGTTACCTCGCTAAATGAAGATACTTTCGAAACGGAACTCGAATTAAAAGAGGAAGACATTTCAGATTATTACGAAAACGAGGACGACGAAATCGAAACGCCTGTGACTACTAATGTGAAAGAAAACATATTCAAGTGCATGCAGTGCGATTTCACCAGTCCCGACTGCGATTTATGGGTGGCTCATCAAAAGAGACACAAAAAAACCAAGCTAGCTAATTGTGACATTTGCGGAAAATCAGTTATAAGCTATAATCTTAAAAGGCATCACCTCATCCATACAGAATCTCCGATGAATTGTCCAATTTGTGGAACAGTGTGTAAGCACGAGGAATCATTAAGGTCGCACATGTTTACGCACAGAAACGGTCCATATACTTGTACAATATGTGGGAAAGTTTATCGACACAGACAAAGTTACAATGCTCACAAGAAACAACACACAgagtATACAATGGAATGTGCAACATGCGGAAAATTATTTTCCGATAAAACATTGCTGAGTGATCATATTAATGCTCGCAactgtgaaaaaaattttccttgtAAATTTTGCGATAAAGGTTTCACTAGTAATTCTGCTCGAAACACACACGAGAGGCTTCATACCAACGAAAAGCCATTTTCGTGTGATCACTGCGATGAGGTTTTCTCCCAGAAGGTTTCGTTGCAAACGCACCTAAAATCTAAACATCCTAACGAAGAAATCATAGATTTGCCAAAGGaacaaaagaaatcaaaaatatacaagCAGGCTATTTGTAGCATTTGCGGAAAATCAGTTATAAGTTACAACATCAAAAGGCACTACCTGATCCACACAGACTCGCCGGTCACGTGTAAAATTTGTGGGAAAGTTTGTAAGCACGAGGAATCGTTACGAGCGCATATGTATGTGCACAACAAAGGCCCATACCGGTGCACGCTATGTGGGAAGTTTTATCGACACAGACAAGATTACAACGCTCACAAAAAACGACATGCATctggAAATGCCAAGACTATAGAATGCTTAACATGCGGAAAACTGTTTTATAATAAGACTACGTTGGTGAGACATATTTATAGTCACACCGGTGAACGACCCTATCCGTGTAAGTTTTGCAACAAAGGATTCACCAGCACTCACGCCCGAAAGACGCACGAACGGCGGCACACAAACGAAAAGCCTTTTTCGTGTAATTTTTGCGACGCGGCTTTTCCCCAGGGAGTCTCCTTACGAACGCATCTTAAATCGAAACATCCTGACCAAATAATTGTTAACGAAGATATTGCagagtaa
- Protein Sequence
- MEFECRTCLKLSTNVSHVYSDDLPHKIETIASVEVLESDKFSSKICEECLTNVNQMYEFRKVIRSSNMILMKRSMKEEEAVTSLNEDTFETELELKEEDISDYYENEDDEIETPVTTNVKENIFKCMQCDFTSPDCDLWVAHQKRHKKTKLANCDICGKSVISYNLKRHHLIHTESPMNCPICGTVCKHEESLRSHMFTHRNGPYTCTICGKVYRHRQSYNAHKKQHTEYTMECATCGKLFSDKTLLSDHINARNCEKNFPCKFCDKGFTSNSARNTHERLHTNEKPFSCDHCDEVFSQKVSLQTHLKSKHPNEEIIDLPKEQKKSKIYKQAICSICGKSVISYNIKRHYLIHTDSPVTCKICGKVCKHEESLRAHMYVHNKGPYRCTLCGKFYRHRQDYNAHKKRHASGNAKTIECLTCGKLFYNKTTLVRHIYSHTGERPYPCKFCNKGFTSTHARKTHERRHTNEKPFSCNFCDAAFPQGVSLRTHLKSKHPDQIIVNEDIAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00268928;
- 90% Identity
- iTF_00268928;
- 80% Identity
- iTF_00268928;