Basic Information

Insect: Cantharis flavilabris
Gene Symbol: -
Assembly: GCA_949152465.1
Location: OX424437.1:4217717-4219255[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.035 1.4e+02 3.8 0.0 21 47 8 34 4 41 0.84

2 16 0.65 2.6e+03 -0.3 0.0 23 48 38 63 32 69 0.75

3 16 0.0026 10 7.4 0.1 22 46 65 89 53 95 0.83

4 16 0.0091 36 5.7 0.0 22 47 93 118 88 125 0.84

5 16 0.85 3.4e+03 -0.6 0.0 22 47 121 146 116 151 0.76

6 16 0.12 4.9e+02 2.1 0.0 21 48 148 175 140 181 0.83

7 16 0.0099 39 5.6 0.0 21 45 204 228 196 231 0.86

8 16 0.018 70 4.8 0.0 21 48 232 259 228 263 0.84

9 16 0.026 1e+02 4.2 0.0 21 51 260 290 258 292 0.86

10 16 0.11 4.3e+02 2.2 0.1 21 52 288 319 285 321 0.75

11 16 0.12 4.9e+02 2.1 0.0 23 52 318 347 312 347 0.83

12 16 0.0015 6.1 8.2 0.0 20 45 343 368 332 372 0.88

13 16 0.0047 19 6.6 0.0 21 46 372 397 368 405 0.85

14 16 0.45 1.8e+03 0.2 0.1 21 47 428 454 420 459 0.74

15 16 0.00046 1.8 9.8 0.3 22 52 457 487 450 488 0.85

16 16 0.0067 27 6.1 0.0 22 46 485 509 482 512 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.035	1.4e+02	3.8	0.0	21	47	8	34	4	41	0.84
2	16	0.65	2.6e+03	-0.3	0.0	23	48	38	63	32	69	0.75
3	16	0.0026	10	7.4	0.1	22	46	65	89	53	95	0.83
4	16	0.0091	36	5.7	0.0	22	47	93	118	88	125	0.84
5	16	0.85	3.4e+03	-0.6	0.0	22	47	121	146	116	151	0.76
6	16	0.12	4.9e+02	2.1	0.0	21	48	148	175	140	181	0.83
7	16	0.0099	39	5.6	0.0	21	45	204	228	196	231	0.86
8	16	0.018	70	4.8	0.0	21	48	232	259	228	263	0.84
9	16	0.026	1e+02	4.2	0.0	21	51	260	290	258	292	0.86
10	16	0.11	4.3e+02	2.2	0.1	21	52	288	319	285	321	0.75
11	16	0.12	4.9e+02	2.1	0.0	23	52	318	347	312	347	0.83
12	16	0.0015	6.1	8.2	0.0	20	45	343	368	332	372	0.88
13	16	0.0047	19	6.6	0.0	21	46	372	397	368	405	0.85
14	16	0.45	1.8e+03	0.2	0.1	21	47	428	454	420	459	0.74
15	16	0.00046	1.8	9.8	0.3	22	52	457	487	450	488	0.85
16	16	0.0067	27	6.1	0.0	22	46	485	509	482	512	0.90

Sequence Information

Coding Sequence: ATGCATTTGAGAACTCATACAGGCGAGAAGCCTTACatgtgtgaaatttgtgattttgcGTTTCCGGCTACCGGATCTCTAAACAGgcatttaaaaactcatacTGGCCGGAAGCCGTTTCTGTGTGACATTTGTGACTTCCAAAGTGGCAGTCAAGCCGACTTGAAACGGCACGTAAGAACTCACACTGGCGATAAGCCTTTCGTTTGCGAAATTTGTGACTTTAAATCTGCCGAAAGAGGAAATTTACGGAGACATTTAAGGACTCACACCGGCGACAAGCCGTTTCCATGTGAAATTTGTGGATTTAAGTTTTCCGATCAAGGAAATTTGAAGAGGCATTTAAagactcataccggcgagaaaccatttaagtgtGAAAATTGCGATTTCAGATGTGCAGTTAAACAGGATTTAAAGAGGCACTTTAGAAtccataccggggaaaaaccgttttcgTGCGACACATGCGACTTTAAATGTTCCGATAGAGGAAACTTAAAAAAGCATTTAATAACTCACTCCGGCACGAAGCCATTTATGTGTGAAGTCTGCGTTTTTGACACAGCACACAAGGAAAGTTTGAAAAGTCATGTGAAAACCCACacaggcgagaaaccatttgctTGCGATATCTGTGCCTTTAAGTTTGCCGTTAAGCAGGATCTAAAGAGACATTTAAGAACTCActccggggaaaaaccgtatgcATGTGatatttgtgattttaaatgtgCGCAAAAGGGATATTTAAAAACGCATTTGACaattcataccggggaaaaaccgttttcaTGTGAATTTTGCGCATTTACGACTGCGCAGCGGGAAAACTTGAAAATTCATATCAGaattcataccggggaaaaaccgttcggTTGTGAattttgcgaatataaatgtgcGAGGAAGGAAGACTTAAATAGGCACTTGAGAACTCATACTGGTAGTAAACCGTTTGCATGTaaaatttgcgattttaaatgttcgttggcgggaaatttgaaaaaccatATGAGAATTCATACTAGTGACAAACCGCATGCGTGTAAAATATGCGACTCGAAATATAAGGATAAAGCAAGTTTAAAGAGACATTTAAGAACccatacgggggaaaaaccgtttccTTGCGATATATGTAGTTTTAAATCTTCTgatgaaagaaatttaaaaacgcattTGATGACTCATacaggcgagaaaccgttttcatgtgaattttgtgaatttaCCACTGCGCATAGAGGAAGCTTAACAGCTCATAtaagaactcatactggcgaaaaaccgttcgagtgtgAAACTTGCGAGTATAAATGTGCGAGAAAGGAAGATTTAAACAGGCATATAAGGACTCATACCGGTAGCAAACCGTTCACATGTGAATTTTGCAGCTTTACCTGCGCAGAAAGGGGAAATTTACGACGTCATTTAAGAATTCACACTGGAGACAAGCCGTATTCGTGTGAATTTTGTGGCTCAAAATTTGGAGATAAGAGAAATTTTAAACGGCATTTAAGAATTCATGCTGCCTAG
Protein Sequence: MHLRTHTGEKPYMCEICDFAFPATGSLNRHLKTHTGRKPFLCDICDFQSGSQADLKRHVRTHTGDKPFVCEICDFKSAERGNLRRHLRTHTGDKPFPCEICGFKFSDQGNLKRHLKTHTGEKPFKCENCDFRCAVKQDLKRHFRIHTGEKPFSCDTCDFKCSDRGNLKKHLITHSGTKPFMCEVCVFDTAHKESLKSHVKTHTGEKPFACDICAFKFAVKQDLKRHLRTHSGEKPYACDICDFKCAQKGYLKTHLTIHTGEKPFSCEFCAFTTAQRENLKIHIRIHTGEKPFGCEFCEYKCARKEDLNRHLRTHTGSKPFACKICDFKCSLAGNLKNHMRIHTSDKPHACKICDSKYKDKASLKRHLRTHTGEKPFPCDICSFKSSDERNLKTHLMTHTGEKPFSCEFCEFTTAHRGSLTAHIRTHTGEKPFECETCEYKCARKEDLNRHIRTHTGSKPFTCEFCSFTCAERGNLRRHLRIHTGDKPYSCEFCGSKFGDKRNFKRHLRIHAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00268796;
90% Identity: iTF_00268796;
80% Identity: iTF_00268796;